RnoINT0028773 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3390683-3391289:-
Coord C1 exon
chr3:3391193-3391289
Coord A exon
chr3:3390861-3391192
Coord C2 exon
chr3:3390683-3390860
Length
332 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TAAAATTGCTATTTCTGTAGCTA
3' ss Score
4.95
Exon sequences
Seq C1 exon
CCAAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCCGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATG
Seq A exon
GTGAGTAATCACTGAATGGTCATAACCGTTTTCTTGAGACCTTAAAGGATTGAGGCAGCCCATCTATCTGTGACAACCAAGGTGGCCTGTGTGTCAGTGCTTGGGCAGACCTCTGAAGTCCAGGCTTGCTTTCTCTGTTTGTGTTCTAGTCTGTGTTGTTTTTAAATTTCGTATTTGTAAGTCAGCCTAGAGCCTCACCAGTTAAACCAATTTTGAAAAGTATGGTTTCAAGTCAGAGTTGAATTGTTTTCATGGCTGTAGGTTCTCTGTGTCTTGCTGACATCATAACTGCAAATAATAGATATATTTGTATAAAATTGCTATTTCTGTAG
Seq C2 exon
CTAAAACGGTGTTACAGCAGAAGAGCAGCCGACCTCCTGTCCCGATCTCCAATGCAACCAAGCGCAGCTTCCTAGGTAGTCCTGCTGCCATGAGCCCCGCTGACCTGCCGCCATCCACCCAGCCTCTCACTGAAGGCAGTCATCGGTACCACCTCCACTCAGAAGAACCTGAGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTATGGTTTTTATCGCTGAGC
R:
GGTTCTTCTGAGTGGAGGTGG
Band lengths:
262-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]