MmuINT0028486 @ mm10
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25944426-25945038:-
Coord C1 exon
chr2:25944942-25945038
Coord A exon
chr2:25944604-25944941
Coord C2 exon
chr2:25944426-25944603
Length
338 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TAAATTTGCTATTTCTGTAGCTA
3' ss Score
5.34
Exon sequences
Seq C1 exon
CCGAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCAGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATG
Seq A exon
GTGAGTAACAACTGGGTGGTCATAGCCATTTTCTTGAGAGCTCGAAGGTTGAGTCAGCCCATCTGTCTGTGAAGGCCAAGGTGGTGTGTGTGTCAGTGCTTGGGCAGACCTGAAGTCCAGGCTTGCCTTTTTTGTCTGTTTTCTGGTCTGTATTGTTTTTAAATTTTGTATTTGTAAGTCAGCCTAGAGCCTCACCTGTTAAACTAATTTTGAGAAGTTTGGTTTCAAATAAAAGTTGAACTGTGTTTCCATGGTTCTAAAGGCTATAGGCTCTCTGTTTCTTGCTGACATTATAACTATAAATAATAGACATTTATATAAATTTGCTATTTCTGTAG
Seq C2 exon
CTAAAACAGTGTTACAGCAGAAGAGCAGCCGGCCTCCTGTCCCTATCTCCAATGCAACCAAACGCAGCTTCCTGGGTAGCCCTGCTGCCATGAGCCCCGCTGACCAGCCACCATCCACCCAGCCTCTTGCTGAAGGCAGTCATCGGTACCACCTCCACTCGGAAGAACCTGAGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933:ENSMUST00000114167:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACGTTATGGTTTTTATCGCT
R:
ACTCAGGTTCTTCCGAGTGGA
Band lengths:
271-609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types