DreINT0005694 @ danRer10
Intron Retention
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53188712-53188972:+
Coord C1 exon
chr3:53188712-53188802
Coord A exon
chr3:53188803-53188926
Coord C2 exon
chr3:53188927-53188972
Length
124 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATACTTTTTGTTGTTGCAGAAA
3' ss Score
8.59
Exon sequences
Seq C1 exon
ACAAATATACTAAGCTTTCTGGCAGAGCTCTTATATTGGTTTGAGGTCTCAAAGCCAGAGTTTGTTCAGCCCCTGCAGGACTCAGTGACTG
Seq A exon
GTAAGTGTATGTCTCAATGAATTAATGAATGCATTACTTTCCTCTTGGTTTTATTTTAGTTTTGGCATTTACATTGACTATGTAAATAATGGAAATGTAAGATAAATACTTTTTGTTGTTGCAG
Seq C2 exon
AAACTTCTGGAAAGATCAATAATGGGAACAGTGGATCCAGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475:ENSDART00000082715:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.875
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(9.6=45.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTAAGCTTTCTGGCAGAGCT
R:
CCATTGCTGGATCCACTGTTCC
Band lengths:
130-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]