RnoINT0028807 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2150269-2150507:+
Coord C1 exon
chr12:2150269-2150362
Coord A exon
chr12:2150363-2150452
Coord C2 exon
chr12:2150453-2150507
Length
90 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TTTCTTTGCGCCCCTAGCAGCTG
3' ss Score
5.28
Exon sequences
Seq C1 exon
GTCAATCTGGTGGTGCTGTTGGCTGAGATGTATATGTGCTTTGAGGTTCTGAAGCCTGATTTTGTTCAGGCCAAAGACTTGCCTGACGGACATG
Seq A exon
GTGAGCTCTGAGGACCTGGGCTTGCCCTGGGGTCAGAGGAGGGTAAAGGAACCTTGCTTTGCTTGACCTCTTTCTTTGCGCCCCTAGCAG
Seq C2 exon
CTGTCTCCCCCCGGAATACCGAGACTGTACCATCTCAGAACAACAGCGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCTGGTGGTGCTGTTGG
R:
CTGCCGCTGTTGTTCTGAGAT
Band lengths:
145-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]