BtaINT0031285 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48747963-48748453:-
Coord C1 exon
chr18:48748396-48748453
Coord A exon
chr18:48748034-48748395
Coord C2 exon
chr18:48747963-48748033
Length
362 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTTTTTGTTTTCCCTGTAGCCA
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAGGAAGAACTTGGCGCCCCTCAGCTCCAGATCTTGTTAAGCATCGCCCTGGAGCCTG
Seq A exon
GTGAGTTGGGGACCAAGAGTGGATCCCCGGAACCCCCATGTGTGTCCAGCCACGATGCTGCTGGGAGAAAGGCCACGGGAACCCTGGCTTCAGCTTGCCAGCACCTCCCCTGTGGCCAGAACTGTGGATCCTGTGATGGGACCTGTGGCCAAGGCCATGGCCACTCATAAGCCTCCGTTCCTCTAAGGGAGAAGCAGGGAGTGTCGCTGCCCTAAGCACTGACTCAGACCGCCTTGCCTGGGTTCAAATCCCAGCTCTGCTAGTTTCCATCAGTTGCAGGACTTTCAGAGATAACAATAATCCTGAGCACTTACCATGATGACCAGGATGTGGGAAGTGCTATCTTTTTGTTTTCCCTGTAG
Seq C2 exon
CCAGGGCCCATGCCCAGACCCCCAGAGAAATCGGGCTCAGGACCTGTGAGCAGCTGCTGCAATGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239:ENSBTAT00000044705:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development