HsaINT0027378 @ hg38
Intron Retention
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
Coordinates
chr19:38734319-38734870:-
Coord C1 exon
chr19:38734813-38734870
Coord A exon
chr19:38734390-38734812
Coord C2 exon
chr19:38734319-38734389
Length
423 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGACTTTGTTTTTCCTGTAGCCA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GAGGAAGAACTCAATGCCTCTCAGCTCCAGGCCTTACTAAGCATTGCCCTGGAGCCTG
Seq A exon
GTGAGTTGGCTGGGATAGGGGCAGGAGGAGGGGTCTTAGCCAGGGGTCCTGCAACCAGAGCCGGTGCCACCCTATGTCTATGAACCCACCGCGCTGCTGGGAGTTGGGCTCAGGAAGCCAGGGCTCAGCCTGGCAGCATCTCCCTGCAGGGGATCTTGTGTGGGCCCCGTGACCTGGGCCACGGCTGCTCGCAAGCTCCCCTTCCGCTGAAAGGCAAGGCTGCCTTGAGCACAGACTGGGCACCCCCTGCCTGGATTTGAATCCCAGCTCTGCTAGGCGCAGCAGTCACTGGCTCCCTGTGCCTCGGCTTCTATAATATGGGACTGACAACATCACCTGCTTAAGGGAGTCACATCCACCCAGCCCTTAAAGTGGTGGCCAGAATGCAGGAAGTGCTGTGGTTTGACTTTGTTTTTCCTGTAG
Seq C2 exon
CCAGGGCCCATACCTCCACCCCCAGAGAGATCGGGCTCAGGACCTGTGAGCAGCTGCTGCAGTGTTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472:ENST00000328867:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development