BtaINT0032770 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44158014-44158820:-
Coord C1 exon
chr4:44158692-44158820
Coord A exon
chr4:44158152-44158691
Coord C2 exon
chr4:44158014-44158151
Length
540 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
GAAATTCTTTTTAACTGTAGCTG
3' ss Score
5.69
Exon sequences
Seq C1 exon
TTTTCACAGTGTACAGACAAAATAAAAGACCTGGAGAAAAAGTTTATAAACCCTGAGGGTGAGAACAGAACACGCTTACTTCCAGGGAAAGATATGACTGAGGAAGAAATGATCAAAAAAATGGATGAG
Seq A exon
GTAAATGTCTTTTCTTAAAATAGCATCTGTTATCCCCTTGTTGATCAGTGTCACAGATATCTGTGGTACTGTTTCATGTTATGCAGATTAATCCCTCATGATTCTAGTCACTAATATAGTCCTTTCATTGTAATTTAGTAACAAAATCTAAGCTTGACTTTAGATGTTGCCAAAAGAAGCAAAATTTGAGTGCTTTCAAGATACCCATCTCTGTCTCACAGCCCATAGGAGCAATTTTGGCATCTTAAATGACTTAGTCTTCCTGATGGAAGCATATCAGAGGAATGACAATATGGGAGCTAGATGGAGCCGAGAGGTCCATTGTTTGCCATGGGGAGAAAGAGCTCCATAGCACATGTGAGGGGAGGGGATGGAGGAGGTTGGAGAGGGTAAGTCTGGACTTCGTCCAGTTCTAAAGATTTTCTGGAGTTATGAAGGCAAGGGGTTTCCACTGGGGAAAGGGGGGAATAGTACTCTAATTAGGAAAGATTTTGACTTGCATGACTTTTTTTCTCCCTTTGAAATTCTTTTTAACTGTAG
Seq C2 exon
CTGGAACTACAGCTGGCCAAGAAGGAGGAGAAGTTGCTGGAGAAGGATTTCATCTATGAACAGGTCTCCCGGCTCACAGACAGGCTCTACAGCAAGACGCAGGCCTGCAAACAGGACACGCTACTCTTAGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341:ENSBTAT00000047247:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTACAGACAAAATAAAAGACC
R:
GCTAAGAGTAGCGTGTCCTGT
Band lengths:
255-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]