GgaINT0109143 @ galGal3
Intron Retention
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13693146-13694111:-
Coord C1 exon
chr1:13693983-13694111
Coord A exon
chr1:13693284-13693982
Coord C2 exon
chr1:13693146-13693283
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
ATATATTCCTCCCACTGCAGCTG
3' ss Score
7.79
Exon sequences
Seq C1 exon
TATTCCCAGTGCAAGGACAGGATTAAAGAGATGGAGGAAATCTTTGTGGACCCCACAAATGAGAGCAGAAAGCGAGACCTGGGAGGGAAAGACCCATCTGCACCTGAACTGCAGAAGAAGATCAAACAG
Seq A exon
GTAGCGTCAGGTCTCACTGCACAGCCCTAACACCGTGCATTGAGTTCTTTTAGAAAAAGCAAATGGTGTGCAAAATAATAAACCACTGATGTATGTGAGCCAAAGGCAGGCCCACCGTCCTCTCAACACAAAACCTGCACACGTGACATAAACCAGCAAACTCTGCAGGGATTGGCTTTTCTGCTTTGTTTCTGCTCCAAACAGAGCCCCAGGAGAGGTCGGTACCCAAAGGCACCCAGGCCAGCTGGGTCACAGCCCACCTGTACCAACCTCACCAACATTACAAAACTGGCTTTTGTGTATGTGTGACGTAGATTTAATGTTCCCATTCAATCTCTCCTTATGTTTTAAAGTCCCTTCAGTTGCACAGTACTTTGTGTTTGGTGCTCACATTTAACAGCAAGGTGTCAGGGGGAGATTACTTCAAGCAAGAGCTGAAACTTTTAATGCCGTAACTCAAAGAACCAGAAATTTAAAAACAAAACAAAAAAATCACTAGGAAAAAAAAAATCATGGCTTTCACTCAAATCATGGCAAAGCAGTAGTAATGCTGGTGTAATTTGGGAAAACTGCCGGTGAAAAACATTGCTGCATAATTACATTAGCTCTGAAGGTGTCTCCAAGCAGCCACAGGAACACCTTCTGTTGCACTTTCCCCCAGCATTTACCTGTGCTGTGCATATATTCCTCCCACTGCAG
Seq C2 exon
CTGGAGGTGGAGCTGGTACAGAAGGAGGAGAAGCTGCTGGAGACAGACATCATCTACCAACACATTGCCCGGCTCACGGACAGGATCCGTGCCACAGCAGAGAATGGGAAGCAGGGCACACTGCTGCTAGCAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309:ENSGALT00000013526:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGTGCAAGGACAGGATT
R:
CTAGCAGCAGTGTGCCCTG
Band lengths:
256-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]