GgaEX0012036 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13691453-13694111:-
Coord C1 exon
chr1:13693983-13694111
Coord A exon
chr1:13693146-13693283
Coord C2 exon
chr1:13691453-13691701
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATATATTCCTCCCACTGCAGCTG
3' ss Score
7.79
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TATTCCCAGTGCAAGGACAGGATTAAAGAGATGGAGGAAATCTTTGTGGACCCCACAAATGAGAGCAGAAAGCGAGACCTGGGAGGGAAAGACCCATCTGCACCTGAACTGCAGAAGAAGATCAAACAG
Seq A exon
CTGGAGGTGGAGCTGGTACAGAAGGAGGAGAAGCTGCTGGAGACAGACATCATCTACCAACACATTGCCCGGCTCACGGACAGGATCCGTGCCACAGCAGAGAATGGGAAGCAGGGCACACTGCTGCTAGCAACAAGG
Seq C2 exon
ATAAATGAACTACAGAAGAAGATAAAAGACAGGACCCAGAAGATGATGGCTCTTGTTGCAGAGTTATCCATGAAGCAAGCACTTGCCATTAAGCTCCAGCAGGAAATGAGAGACAGAGAAGAGTTTTTGATGATTGTTTCATCAAGGATAGATCAAGGCCTTCCTCCTCCTAAAGAGACAGAGATTGAATGGTTGAAGGTTTTACGCAATGAGAAGATGCACAAAGAAGCAGCAGAGGCCAGAGCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.395 A=0.022 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCAGTGCAAGGACAGGA
R:
GTCTCTCATTTCCTGCTGGAGC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event