GgaEX0012035 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13693146-13701123:-
Coord C1 exon
chr1:13700895-13701123
Coord A exon
chr1:13693983-13694111
Coord C2 exon
chr1:13693146-13693283
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTTCTGTTTGCCAGTAT
3' ss Score
6.71
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
CGGCCTTCTGCTTAGAAGTCGAGAAGAAGAAATATGTATTTTATATGAAAAAATAAATGCACAAGAGTTTTTGTGTAGAAAAGGAGATATTGAGATGCAAGCTACGGATGAAAAGATCAGTTTTCTGAAGATGAAGGTGGCTGAGAAAGAGAGACAGATCAAATTCTGGCTCAAAGCACTCCCAATGAAGAGAGTCCTGGACGCAGAGTTGGTCGTACTTCAGATACAG
Seq A exon
TATTCCCAGTGCAAGGACAGGATTAAAGAGATGGAGGAAATCTTTGTGGACCCCACAAATGAGAGCAGAAAGCGAGACCTGGGAGGGAAAGACCCATCTGCACCTGAACTGCAGAAGAAGATCAAACAG
Seq C2 exon
CTGGAGGTGGAGCTGGTACAGAAGGAGGAGAAGCTGCTGGAGACAGACATCATCTACCAACACATTGCCCGGCTCACGGACAGGATCCGTGCCACAGCAGAGAATGGGAAGCAGGGCACACTGCTGCTAGCAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'18-18,'18-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.395 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTTCTGCTTAGAAGTCG
R:
CCTCCTTCTGTACCAGCTCCA
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event