MmuEX6016102 @ mm10
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:21296934-21301456:-
Coord C1 exon
chr5:21301228-21301456
Coord A exon
chr5:21297549-21297677
Coord C2 exon
chr5:21296934-21297071
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTCTTTTGCACCAGTTT
3' ss Score
6.43
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGGTGTTCAGCTGATCGAGCGGGAAGAAGAAGTGTGCATTTTTTACGAAAAAGTGAATGTCCAAGAGAAGATAAAACTTCATCAGGATGTTGAAATCCACATTCTGGAAGAAAAAATCCGATTCCTAAAACTGAGGATTGCCGAAAAGCAAAGGCAGATTTCTGTGACACGGAAACTAGTGCCAATCAAGAAGTCCCTGGATGCCGACCTGGCTGTGATCCAGATTCAG
Seq A exon
TTTTCACAGTGCACAGACAGGATAAAAGACCTGGAGAAACTCTTTGTGAACCCTGACAGCAAGGGCAGGGTCCGCTTCATTAAAGGGAAAGATCTGACTGAAGAAGAAATGATCAAGAAATTAGATATG
Seq C2 exon
CTGGAACTTCAGATAGCCAAGAAGGAGGAGAAGCTCCTGGAGAAGGATTTCATCTATGAGCAGGTGTCCCAGCTCACAAACAGGCTCAAAGGCAAAACTCAGGCTTGCAAGAAGGACACACTGCTCTTAGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGAAGAAGAAGTGTGCAT
R:
AGCTTCTCCTCCTTCTTGGCT
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types