HsaEX6008586 @ hg19
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76911874-76916894:+
Coord C1 exon
chr7:76911874-76912102
Coord A exon
chr7:76916115-76916243
Coord C2 exon
chr7:76916757-76916894
Length
129 bp
Sequences
Splice sites
3' ss Seq
TAATGTTTTTTTCTTAATAGTTT
3' ss Score
6.99
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGGCGTTCAGCTGATAGAGCGGGAAGAAGAAATATGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAACTAAATGGAGAAATTGAAATACATCTACTGGAAGAAAAGATCCAATTCCTGAAAATGAAGATTGCTGAGAAGCAAAGACAAATTTGTGTGACCCAGAAATTACTGCCAGCCAAGAGGTCCCTGGATGCCGACCTAGCTGTGCTCCAAATTCAG
Seq A exon
TTTTCACAGTGTACAGACAGAATTAAAGACCTGGAGAAACAGTTCGTAAAGCCTGATGGTGAGAATAGAGCTCGCTTCCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAAAATTAGACAAG
Seq C2 exon
CTGGAACTACAACTGGCCAAGAAGGAGGAGAAGCTGCTGGAGAAGGATTTCATCTATGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAACTCAGGGCTGCAAGCAGGACACACTGCTCTTAGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-'21-26,'21-24,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATAGAGCGGGAAGAAGA
R:
TCTCCTCCTTCTTGGCCAGTT
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)