DreEX0019416 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20471129-20474116:+
Coord C1 exon
chr4:20471129-20471357
Coord A exon
chr4:20472819-20472938
Coord C2 exon
chr4:20473979-20474116
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTTCTGTGTCATAGTTG
3' ss Score
7.27
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCTGTGCAGCTTGCAGAAAGAGAGAAGGAATGGCGTATTTTCAATGAGAAGCTTGGTGTACTGGTGAAAATGACTGAAAACAGCAACTTGGAGATGTATGACATGGAAGATGAAATCAGAAACTTGAAAATGGAACAGAAAGAAGAAGAAAGACAGAATGATCTGCACAAAAAGCAGTTGTCAAACAAACTAGCTCTGGAGGAAGAGCGTGTCTTATTACAGATACAG
Seq A exon
TTGTCTGAGATAAATGACAGAGTGTCTGAGCTGGAAGAGGCTTGTGTGGACGATAACAGAGCAAGAAACCTGAATGGAGAAGATCCATCTCCTGAGGAGCTCATTGAGAAGATTGAACAG
Seq C2 exon
TTGGAGATACACCTGGCAGATAAAGAGGCTCAGCTCTTGGAAATGGAGCTTGTGTGTGAGCAGGTTGGACGCCTTTCCAAGCGCATCCAAATCAAAGCTGACAACAGTAATGAAGACACACTCCATCTGGCCAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794-'16-16,'16-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.475 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGCTTGGTGTACTGGTG
R:
GTCCAACCTGCTCACACACAA
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]