BtaEX6026946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44158014-44162432:-
Coord C1 exon
chr4:44162204-44162432
Coord A exon
chr4:44158692-44158820
Coord C2 exon
chr4:44158014-44158151
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTCTTGTTTAATAGTTT
3' ss Score
8.09
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TGGTGTTCAGCTGATAGAGCGGGAAGAGGAAGTGTGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAGCTAAATGGAGAAATTGAACTACATGTCCTGGAGGAAAAGATCCGATTCCTGAAACTCAAGATTGCTGAGAAGCAAAGACAGATTCACGTGACCCGGAAATTACTGCCAGTTAAGAGTGCTTTGGATGCTGACTTAGCAGTGCTCCAGATTCAG
Seq A exon
TTTTCACAGTGTACAGACAAAATAAAAGACCTGGAGAAAAAGTTTATAAACCCTGAGGGTGAGAACAGAACACGCTTACTTCCAGGGAAAGATATGACTGAGGAAGAAATGATCAAAAAAATGGATGAG
Seq C2 exon
CTGGAACTACAGCTGGCCAAGAAGGAGGAGAAGTTGCTGGAGAAGGATTTCATCTATGAACAGGTCTCCCGGCTCACAGACAGGCTCTACAGCAAGACGCAGGCCTGCAAACAGGACACGCTACTCTTAGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'21-19,'21-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATAGAGCGGGAAGAGGA
R:
TCCTTCTTGGCCAGCTGTAGT
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]