HsaEX6008586 @ hg38
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77282557-77287577:+
Coord C1 exon
chr7:77282557-77282785
Coord A exon
chr7:77286798-77286926
Coord C2 exon
chr7:77287440-77287577
Length
129 bp
Sequences
Splice sites
3' ss Seq
TAATGTTTTTTTCTTAATAGTTT
3' ss Score
6.99
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGGCGTTCAGCTGATAGAGCGGGAAGAAGAAATATGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAACTAAATGGAGAAATTGAAATACATCTACTGGAAGAAAAGATCCAATTCCTGAAAATGAAGATTGCTGAGAAGCAAAGACAAATTTGTGTGACCCAGAAATTACTGCCAGCCAAGAGGTCCCTGGATGCCGACCTAGCTGTGCTCCAAATTCAG
Seq A exon
TTTTCACAGTGTACAGACAGAATTAAAGACCTGGAGAAACAGTTCGTAAAGCCTGATGGTGAGAATAGAGCTCGCTTCCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAAAATTAGACAAG
Seq C2 exon
CTGGAACTACAACTGGCCAAGAAGGAGGAGAAGCTGCTGGAGAAGGATTTCATCTATGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAACTCAGGGCTGCAAGCAGGACACACTGCTCTTAGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-'44-48,'44-45,47-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATAGAGCGGGAAGAAGA
R:
TCTCCTCCTTCTTGGCCAGTT
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains