GgaEX0012036 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GL07]
Coordinates
chr1:12535966-12538594:-
Coord C1 exon
chr1:12538496-12538594
Coord A exon
chr1:12537659-12537796
Coord C2 exon
chr1:12535966-12536214
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATATATTCCTCCCACTGCAGCTG
3' ss Score
7.79
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGAGGAAATCTTTGTGGACCCCACAAATGAGAGCAGAAAGCGAGACCTGGGAGGGAAAGACCCATCTGCACCTGAACTGCAGAAGAAGATCAAACAG
Seq A exon
CTGGAGGTGGAGCTGGTACAGAAGGAGGAGAAGCTGCTGGAGACAGACATCATCTACCAACACATTGCCCGGCTCACGGACAGGATCCGTGCCACAGCAGAGAATGGGAAGCAGGGCACACTGCTGCTAGCAACAAGG
Seq C2 exon
ATAAATGAACTACAGAAGAAGATAAAAGACAGGACCCAGAAGATGATGGCTCTTGTTGCAGAGTTATCCATGAAGCAAGCACTTGCCATTAAGCTCCAGCAGGAAATGAGAGACAGAGAAGAGTTTTTGATGATTGTTTCATCAAGGATAGATCAAGGCCTTCCTCCTCCTAAAGAGACAGAGATTGAATGGTTGAAGGTTTTACGCAATGAGAAGATGCACAAAGAAGCAGCAGAGGCCAGAGCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028239-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.788 A=0.022 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCACAAATGAGAGCAGA
R:
CTCTTTAGGAGGAGGAAGGCCT
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]