RnoEX0017649 @ rn6
Exon Skipping
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10410734-10414424:+
Coord C1 exon
chr4:10410734-10410862
Coord A exon
chr4:10411492-10411629
Coord C2 exon
chr4:10414176-10414424
Length
138 bp
Sequences
Splice sites
3' ss Seq
GAAATTGTTTCCAACAATAGCTG
3' ss Score
3.33
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TTTTCGCAGTGCGCAGATAGGATAAAAGCCCTGGAGAAATGTTTTGTGAACCCCGACTGCCAGGGCAGAGTCCGCTTCATTCCGGGGAAAGATCTGACCGAAGAAGAAATGATCAAGAAATTAGATATG
Seq A exon
CTGGAACTTCAGCTAGCCAAGAAGGAAGAGAAGTTACTGGAGAAGGATTTCATCTATGAGCAGGTGTCCCAGCTCACAAACAGGCTCAAAACCAAAACTCAGGCTTGCAAGATGGACACACTGCTCTTAGCCAAGAAG
Seq C2 exon
ATGAACAGCTACCAAAAAAAGATCAAAGATGTCACCCAGGAAATGATGGCTCTCGTTGCTGAGCTGTCCATGAAACAAGCCCTAACCATTGAACTCCAAAAGGAGGTGAGAGAGAAGGAAGAATTCATCTTCTCCTGCAGTTCCAGGATAGAAAAGGGCCTCCCACTCAACAGAGAGATCGAGAAGGACTGGCTGAAGGTACTTCGAGATGAAGAAATGTATGCCTTTGCTACTGCTGAGAAGACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCATTCCGGGGAAAGAT
R:
CCTTCAGCCAGTCCTTCTCGA
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]