DreEX6002478 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20472819-20474658:+
Coord C1 exon
chr4:20472819-20472938
Coord A exon
chr4:20473979-20474116
Coord C2 exon
chr4:20474410-20474658
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTCTATGTGTGTGTGTTTAGTTG
3' ss Score
7.36
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTGTCTGAGATAAATGACAGAGTGTCTGAGCTGGAAGAGGCTTGTGTGGACGATAACAGAGCAAGAAACCTGAATGGAGAAGATCCATCTCCTGAGGAGCTCATTGAGAAGATTGAACAG
Seq A exon
TTGGAGATACACCTGGCAGATAAAGAGGCTCAGCTCTTGGAAATGGAGCTTGTGTGTGAGCAGGTTGGACGCCTTTCCAAGCGCATCCAAATCAAAGCTGACAACAGTAATGAAGACACACTCCATCTGGCCAAGAAA
Seq C2 exon
GTGAATGAACTGCAGGCTCAGATCAGAAAGCGCAGCCGTAAAATGATGGCGGTGGTAGCAGAGCTGTCCATGCGGAAAGCCGAGTGTATGGGCCTGCAGCAGGAGATGAAGGAAAAGGAACTGCAGCTGGACTTGTGTCAAAAGCATGTGGAGCAAGGTTTGCCCCCGTCAGATAGCATTGAGAACGAGTGGCTGCGTCATCTTCAAGATCAACATAGACGCCTGGCAGATGCTGAGCGAAAAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.152 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTGGAAGAGGCTTGTG
R:
ACCTTGCTCCACATGCTTTTGA
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]