BtaEX6026947 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44153793-44158820:-
Coord C1 exon
chr4:44158692-44158820
Coord A exon
chr4:44158014-44158151
Coord C2 exon
chr4:44153793-44154041
Length
138 bp
Sequences
Splice sites
3' ss Seq
GAAATTCTTTTTAACTGTAGCTG
3' ss Score
5.69
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
TTTTCACAGTGTACAGACAAAATAAAAGACCTGGAGAAAAAGTTTATAAACCCTGAGGGTGAGAACAGAACACGCTTACTTCCAGGGAAAGATATGACTGAGGAAGAAATGATCAAAAAAATGGATGAG
Seq A exon
CTGGAACTACAGCTGGCCAAGAAGGAGGAGAAGTTGCTGGAGAAGGATTTCATCTATGAACAGGTCTCCCGGCTCACAGACAGGCTCTACAGCAAGACGCAGGCCTGCAAACAGGACACGCTACTCTTAGCCAAGAAG
Seq C2 exon
ATGAATGGCTACCAGAAAAAGATCAAAGATGCTACTGAAAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCTATGGCCATTGAACTCCAAAAGGAAGTCAAGGAGAAGGAAGAGTTCATCTTCACTTGCAATTCCAGGATGGAAAAGGGTCTTCCCCTCAATAAAGAGATTGAGAGAGAATGGTTGAAAGTACTTCGAGATGAAGAAATGTATGCCATGGCCATCGCTGAAAAGTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'22-21,'22-19,23-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGGGTGAGAACAGAAC
R:
GGAAGACCCTTTTCCATCCTGG
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]