GgaINT0109143 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GL07]
Coordinates
chr1:12537659-12538594:-
Coord C1 exon
chr1:12538496-12538594
Coord A exon
chr1:12537797-12538495
Coord C2 exon
chr1:12537659-12537796
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
ATATATTCCTCCCACTGCAGCTG
3' ss Score
7.79
Exon sequences
Seq C1 exon
ATGGAGGAAATCTTTGTGGACCCCACAAATGAGAGCAGAAAGCGAGACCTGGGAGGGAAAGACCCATCTGCACCTGAACTGCAGAAGAAGATCAAACAG
Seq A exon
GTAGCGTCAGGTCTCACTGCACAGCCCTAACACCGTGCATTGAGTTCTTTTAGAAAAAGCAAATGGTGTGCAAAATAATAAACCACTGATGTATGTGAGCCAAAGGCAGGCCCACCGTCCTCTCAACACAAAACCTGCACACGTGACATAAACCAGCAAACTCTGCAGGGATTGGCTTTTCTGCTTTGTTTCTGCTCCAAACAGAGCCCCAGGAGAGGTCGGTACCCAAAGGCACCCAGGCCAGCTGGGTCACAGCCCACCTGTACCAACCTCACCAACATTACAAAACTGGCTTTTGTGTATGTGTGACGTAGATTTAATGTTCCCATTCAATCTCTCCTTATGTTTTAAAGTCCCTTCAGTTGCACAGTACTTTGTGTTTGGTGCTCACATTTAACAGCAAGGTGTCAGGGGGAGATTACTTCAAGCAAGAGCTGAAACTTTTAATGCCGTAACTCAAAGAACCAGAAATTTAAAAACAAAACAAAAAAATCACTAGGAAAAAAAAAATCATGGCTTTCACTCAAATCATGGCAAAGCAGTAGTAATGCTGGTGTAATTTGGGAAAACTGCCGGTGAAAAACATTGCTGCATAATTACATTAGCTCTGAAGGTGTCTCCAAGCAGCCACAGGAACACCTTCTGTTGCACTTTCCCCCAGCATTTACCTGTGCTGTGCATATATTCCTCCCACTGCAG
Seq C2 exon
CTGGAGGTGGAGCTGGTACAGAAGGAGGAGAAGCTGCTGGAGACAGACATCATCTACCAACACATTGCCCGGCTCACGGACAGGATCCGTGCCACAGCAGAGAATGGGAAGCAGGGCACACTGCTGCTAGCAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028239:ENSGALT00000043386:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGAAATCTTTGTGGACCC
R:
GCTAGCAGCAGTGTGCCC
Band lengths:
230-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]