BtaINT0032772 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44152046-44154041:-
Coord C1 exon
chr4:44153793-44154041
Coord A exon
chr4:44152507-44153792
Coord C2 exon
chr4:44152046-44152506
Length
1286 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
GGATAAATCATTCTTTGCAGGAG
3' ss Score
5.51
Exon sequences
Seq C1 exon
ATGAATGGCTACCAGAAAAAGATCAAAGATGCTACTGAAAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCTATGGCCATTGAACTCCAAAAGGAAGTCAAGGAGAAGGAAGAGTTCATCTTCACTTGCAATTCCAGGATGGAAAAGGGTCTTCCCCTCAATAAAGAGATTGAGAGAGAATGGTTGAAAGTACTTCGAGATGAAGAAATGTATGCCATGGCCATCGCTGAAAAGTCTCGG
Seq A exon
GTAAGCTATGGCTTCTTTATTTTCTACATTGCATTTGTAAAGTGTGCCAGGAAGGGCTGTTTCAGGGATTGTCAATCTCCCAAAATACATGAAATTTTTCTACTCCACAGCACACAGAGTCCCAACAACTCATTAGAGAGAAGTTTTGCTCTTTTTAAGCTATTACGTAGGTAGTCAAAAGTACAACAGTGCAAAGCGTCAGAATATTCCCTGGAGAACATTTGGCAAGCACCAAGTCCCACGCCAGGGCCTCCCACTAGCATGGCAATGTCCATGCTGGCATTGGTTTTATCTTAGATCTCTGGTCTCTGTCTTTGCAGCCCTGCTCAGACCATACCTTACTCTTCGATGTCCATCTGCTGTGGCCACCACAGCATATTGTAAGGCCTCAGGCATAAGCTCATCACAGGTTTCTGAAGACTCTACATTTGGTGCAAAAGCGATGACTCCAGCGCCACCCTTCTTCTCCCACCAGTGACCTAACTCTATCACTGACCCCACTTAGGAGCTGTGTGTCCAGTTCTTTTTCCTACTCCCATGATTTTTCAATAATCTTAGAGTGGAATTAGGCATCTCTTTCAAAAGAGACCTACAACTTACTCTTGACTATGGGGCAGACATCCCCAGAAGATCACTATTCACTCTCTAAGCCAAGAAAAAAGTGTATTCCAAACACATACTAAGAATTCTTGAAAATAGGGTCTGACTTATCATTCTCACACTCACTGCCTAGGATTGTATTTTTGAAGACATTCAGATTTTTACCTGTGGTGTCCCAGCTGTCATTTACCTGTCTCCATTTCCCAACCCACCCCCCCCCCCAACCTGTTTTCCAGAAACACAGGCAGAATCTTGAGGCTCAAAGCAAGCTGCTGACCACTTTCCTCTAATTCTATTTTACTCTTCCTTTGTACCATTTGCTCACCAATGACCTACCAAAGGAAATAGATTATCCTGCCTTTGTCACAGACATGGAAATAACTAGTGCTTAATGTAAGATACTAAGTTTGGAACATGGTGACTTTAGGCCCTATCAACCAGTTTATGGTAGACCCTATACCCCAGGAACAGAGTGATGCTTGAGCAACATGGCTCATTCTAGTGAGAGGAAATGTGTGTGGGGGTGTGTGTGTTTGGTGACTCTACCCTCACACCCTTTTGTCCCTTGGAATATTGGCCAGCATAGCCAACGGGTGCTCAGACCCAGCTGTGTCTGATGGGCCCTGGGGATGAAGTGACTTAACCACTGTTTTCAAAAACTGAAAAGGATAAATCATTCTTTGCAG
Seq C2 exon
GAGTTCTTGGAAGCTGAAACTCGCCAGCTGCCCAATGGTGTTTACACAACTGCGGAGCAGCGTCCAAATGCCTACATCCCAGAGGCAGAGGCCACTCTTCCTCTGCCAAAACCGTATGGCGCTCTGGCTCCTTTCAAACCCAGTGAACCTGGGGCTAACATAAGACACATAAGGAAACCTGTTATAAAGCCAATTGAAATCTGAACATGTGAACCAACCCAGGCTTCTGAAGGAGATACTTCAACCAGGCTTCTTCACATCCACAGCTGGAAAATGTCAGCAAACAGCCCTAAATTACAAACAAACACAGTATCCACAATTACCCAACAGACGACAACATATACTTCCTTCCATTCATACTCATCGATTTTTCTTTTTCACTCCATCTCTTGATTACATTTCAGAAATATATAGTAGTCTGAGTGTTATACAAATGCAATAAAAATAAATACCTTTTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341:ENSBTAT00000047247:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTCTTGTTGCTGAGCT
R:
CACTGGGTTTGAAAGGAGCCA
Band lengths:
350-1636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]