DreINT0042348 @ danRer10
Intron Retention
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20474410-20476339:+
Coord C1 exon
chr4:20474410-20474658
Coord A exon
chr4:20474659-20476041
Coord C2 exon
chr4:20476042-20476339
Length
1383 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTTCTGTGATTGTTTGTTAGCTG
3' ss Score
5.95
Exon sequences
Seq C1 exon
GTGAATGAACTGCAGGCTCAGATCAGAAAGCGCAGCCGTAAAATGATGGCGGTGGTAGCAGAGCTGTCCATGCGGAAAGCCGAGTGTATGGGCCTGCAGCAGGAGATGAAGGAAAAGGAACTGCAGCTGGACTTGTGTCAAAAGCATGTGGAGCAAGGTTTGCCCCCGTCAGATAGCATTGAGAACGAGTGGCTGCGTCATCTTCAAGATCAACATAGACGCCTGGCAGATGCTGAGCGAAAAGCCATG
Seq A exon
GTAAGACTGAATGCCATCAAATAGACACTAAAAAACTAAAAAATCATGTTGTGCTTATTTATCATTACCTCTACTGAACATAATGAACATATATTGTATTGATCTAATATAATATGGTGTTTGTAAACACTTTTTCAGGAACACAATGTTCCTCTGTTTAATCCTTACTGCCATAATTTACTCATCTTCTGAGTTTTTCTTCTGTTGAACACAAAGGAAGATACAGGTAATCAGTGTAGGGAAAAATTACTTTTGAAAGTAATGCATTACAAAACTAAGTTACTCCCCCAAAAAGTAACTAGTAGTGTTACAGTTACATTTTATGGTATATAATGCGTTACGTTACTTTTGAGTTACTTTTGTGTTACTTTTTATTACCTGGCCGAGGCATGATCTCTTTCAGAACTCTTTCAGAAGGAGCTCTGCAATTAACGATGCACTGTATACCCTACACCTATATTTACCTTTAAAAAAACACACGCTAATTAATTAAACTAAAAAGTAACTCGAATTACATTTTCAAAAAAGTGACTCAAATATTTTTTGCTTACTTTTCTCACATTTTTTTAGAATATCTGTTTTGTGTTCAACAGAAGAAAGAAATTCATAAAAGTTTAGAACCATTTAGTGAGTAAATGAGGAAAACGTTCACTTTTAACTTTATCTAGTTAACTTTTTTACTTTATCATTTATATCCACACACATAATTAAATATTTATTTAAACTGTTTTTTATATATTGAGAAACCATTTATACAAAGATTAAAAATTATTTCAAATATTGATATACATCTTTAGTAATAATAACAATGTAATGATTTTAAAAAAGAGCTGAGAAATAAGGAAGGGGAAATAACGAAAGTGTGCAATAAGCACACAATAAATAAATCACCAAAATAAAATATATATTTAAATTTTTTTTTTTTTTTTAAAGTCGAAAAATTTCAACTTCTCTGTTGTAACTGGTTCATCCCACTATTACAAGGGGAATATGGTCAAAACAAATCTGTCCAAAGAATTAAACTTTCAGATTATAGATAATTGTATTAAAATATTTAGGTAAATATATAAGATCAGTTTATTTTTTGATACCGTTATCGTTATTAACAAATCATTAACTATGACTTTAGCCTCAATAAAATCCTAATTATTACTTATTAAGGTAGTATTTGGGTTTAGGTATTGGGTAGGTTTAGAAATATAGAATAAGATCATGCAGAATATGTACTTATACATGTACTAAGCACTATATAATAAGCCACTAGTTAATAGTGAGAATTGTTACCTAAACTAAAGACTTAAGAAATTTATGCCACGATTATTATTAACATCATGTTACATTATACTGACACTCTACTATACTATTTCTGTGATTGTTTGTTAG
Seq C2 exon
CTGGCAGAGGAAGACGAGTGGAACCAGCTTCCAAATGGTGTTTACACCACGGCTGAACTTCGACCCAATGCTTACATCCCCATTGACGATCCTTTGCCAGTGCCCAAACACTATGGAGCCCTGGCCCCCTTTAAACCCACTGAACCCGGTGCCAACATTCGCCACATTCGCAAACCAAAAATCAAGCCTATTGAGATCTAGAGTTAGTCTCACCTGAAAACTGGTGATGCATACAGATATAGAAACAAATGTCCTGATGTGCTCCCAGTTTTAAAGAATCTGGTCTATTTCCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794:ENSDART00000017947:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTGAGAACGAGTGGCTG
R:
ACTGGGAGCACATCAGGACAT
Band lengths:
344-1727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]