HsaINT0029139 @ hg38
Intron Retention
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77292952-77295204:+
Coord C1 exon
chr7:77292952-77293200
Coord A exon
chr7:77293201-77294662
Coord C2 exon
chr7:77294663-77295204
Length
1462 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGAAAAATCATTCTTTGCAGGAG
3' ss Score
4.54
Exon sequences
Seq C1 exon
ATGAATGGCTATCAAAGAAGGATCAAAAATGCAACTGAGAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCCCTAACCATTGAACTCCAAAAGGAAGTCAGGGAGAAAGAAGACTTCATCTTCACTTGCAATTCCAGGATAGAAAAAGGTCTGCCACTCAATAAGGAAATTGAGAAAGAATGGTTGAAAGTCCTTCGAGATGAAGAAATGCACGCCTTGGCCATCGCTGAAAAGTCTCAG
Seq A exon
GTAGGCTTTGGCTCCTGTATTGCATTTCTAAAGGGTGCCAGCAGGGGTTGCATTCAGGCAACCCACAGTTATCCCACAGTATAAGAAAAATTTCCCCACTCTACCACACACAGTCCCAACAGTCGTTAGAAGTGTATTTAAGATATTCTATGATAAGTCAAAGTGCAGTAATCCAGAGTGCTACAATACTCACTGAAGAACACTTAGCAAGCACAGGGCCCACCCCATAGCCTTACATCCTGGGCTGCTGAGGCTGAACATCATGGCCTTCCACCAGCATAGCAATGACCAGGCTGGCACTGGCCTTGTCCATAAGTCTCCAATCTCTGTCTTGGCACCTCTGCTCAGACCACATCTGACTGTTCCATGTTCATCTCCTGTGGCCTCCACAGCATACAGTGAGGCCTCCACCCACATTTTAGGTGCCATGCCTTCTGCAGATGCTTGATGTACATCATAGGCCCCAGCGCCACCCCTTTCTTTTCCCACCTTAGGCCTCTGGCCTAAGACTAGGTCTATTGCTGACTCCCCCTGCAAGTTAGATAGCAGATCTTCTGTCTACCCCCATGACCTGTCAGTATTCTTAGACTGGAATTAGGCATCTCTTTCCAAGGAGTCTACATCCTCCAGATGTACAACTCACTCAGATTGCCAAGTGGGTATCACCGAAAGGGTCCCTATTTGCTCCTGAACTCAAGACAAAACTGCATTCAGAACACACTAGGAATACCTGAGCACAAGTGTAAATTACGTGATTTATAATTTCCACACCACCTGGGACTGTTCCTTTCAGGGCATTCAGATTTTACCTGTGGTGTCCCACTGCCATTTATTAGAGGGCTTTTCAGTGCAGTAAGTGATTACTCTATTTTCCAGAGGCACAGACAAAATCTTGAAAACGTTGAGGCTCAGGGCAAAGCTGGTGACCATTTTCCTCCTCTGGTTCCACTTTACTCCTCTACCTCTTCCATTGTAACTTTTGCTCACCAATGACTTACCAAAGGAAATATGTTGCTCTGCCTTTGTCAAAAACAGGGAAATAATTAGTGCTTGATGACAGATATTGAGGTGGAAACATAGTTAAGACCCACAAAGCAGTCTTTGAAAAACACTAAACTCCAGGATTAATGTGATGCTTAAGCAATACAGCCCATTCCAATGAGGTGTGGGGGTGTGTGTGTGTGGTGTGATTCCACCCTCCTACCCTAAACCCCAGGAATAATGTGATGCTGAAGCAATACAGCCCATGCCAATGAGAGGTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGATTCTACCCTCCTACCCCTCCCATCCCTTTGGGGAGTATCAGCTAGCACGGTCAAAGACTGTCCAGACCAGCTGTGTCTTTTGGGACCTAAGGATAAAGTGACTTCACCAGAGTTTTCAGAGAACTGAAAAGGAAAAATCATTCTTTGCAG
Seq C2 exon
GAGTTCTTGGAAGCAGATAATCGCCAGCTGCCCAATGGTGTTTACACAACTGCAGAGCAGCGTCCGAATGCCTACATCCCAGAAGCAGATGCCACTCTTCCTTTGCCAAAACCTTATGGTGCTTTGGCTCCTTTTAAACCCAGTGAACCTGGAGCCAATATGAGGCACATAAGGAAACCTGTTATAAAGCCAGTTGAAATCTGAATATGTGAACAAATCCAGGCCTCTCAAGGAAAAGACTTCAACCAGGCTTCCTTGTACCCACAGGTGAAAAATGTGAGCATAATACTTCTAATATTATTGATAAGTAAGGTAACCACAATTAGTCAGCAACAGAGTACAACAGGGTTTCTATTTACCCACCAACTACTATACCTTTCATGACGTTGAATGGGACATAGAACTGTCCTACATTTATGTCAAAGTATATATTTGAATCGCTTATATTTTCTTTTTCACTCTTTATATTGAGTACATTCCAGAAATTTGTAGTAGGCAAGGTGCTATAAAAATGCACTAAAAATAAATCTGTTCTCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205:ENST00000285871:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCATGAAACAAGCCCT
R:
GCCTCATATTGGCTCCAGGTT
Band lengths:
353-1815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development