HsaINT0029139 @ hg19
Intron Retention
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76922269-76924521:+
Coord C1 exon
chr7:76922269-76922517
Coord A exon
chr7:76922518-76923979
Coord C2 exon
chr7:76923980-76924521
Length
1462 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGAAAAATCATTCTTTGCAGGAG
3' ss Score
4.54
Exon sequences
Seq C1 exon
ATGAATGGCTATCAAAGAAGGATCAAAAATGCAACTGAGAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCCCTAACCATTGAACTCCAAAAGGAAGTCAGGGAGAAAGAAGACTTCATCTTCACTTGCAATTCCAGGATAGAAAAAGGTCTGCCACTCAATAAGGAAATTGAGAAAGAATGGTTGAAAGTCCTTCGAGATGAAGAAATGCACGCCTTGGCCATCGCTGAAAAGTCTCAG
Seq A exon
GTAGGCTTTGGCTCCTGTATTGCATTTCTAAAGGGTGCCAGCAGGGGTTGCATTCAGGCAACCCACAGTTATCCCACAGTATAAGAAAAATTTCCCCACTCTACCACACACAGTCCCAACAGTCGTTAGAAGTGTATTTAAGATATTCTATGATAAGTCAAAGTGCAGTAATCCAGAGTGCTACAATACTCACTGAAGAACACTTAGCAAGCACAGGGCCCACCCCATAGCCTTACATCCTGGGCTGCTGAGGCTGAACATCATGGCCTTCCACCAGCATAGCAATGACCAGGCTGGCACTGGCCTTGTCCATAAGTCTCCAATCTCTGTCTTGGCACCTCTGCTCAGACCACATCTGACTGTTCCATGTTCATCTCCTGTGGCCTCCACAGCATACAGTGAGGCCTCCACCCACATTTTAGGTGCCATGCCTTCTGCAGATGCTTGATGTACATCATAGGCCCCAGCGCCACCCCTTTCTTTTCCCACCTTAGGCCTCTGGCCTAAGACTAGGTCTATTGCTGACTCCCCCTGCAAGTTAGATAGCAGATCTTCTGTCTACCCCCATGACCTGTCAGTATTCTTAGACTGGAATTAGGCATCTCTTTCCAAGGAGTCTACATCCTCCAGATGTACAACTCACTCAGATTGCCAAGTGGGTATCACCGAAAGGGTCCCTATTTGCTCCTGAACTCAAGACAAAACTGCATTCAGAACACACTAGGAATACCTGAGCACAAGTGTAAATTACGTGATTTATAATTTCCACACCACCTGGGACTGTTCCTTTCAGGGCATTCAGATTTTACCTGTGGTGTCCCACTGCCATTTATTAGAGGGCTTTTCAGTGCAGTAAGTGATTACTCTATTTTCCAGAGGCACAGACAAAATCTTGAAAACGTTGAGGCTCAGGGCAAAGCTGGTGACCATTTTCCTCCTCTGGTTCCACTTTACTCCTCTACCTCTTCCATTGTAACTTTTGCTCACCAATGACTTACCAAAGGAAATATGTTGCTCTGCCTTTGTCAAAAACAGGGAAATAATTAGTGCTTGATGACAGATATTGAGGTGGAAACATAGTTAAGACCCACAAAGCAGTCTTTGAAAAACACTAAACTCCAGGATTAATGTGATGCTTAAGCAATACAGCCCATTCCAATGAGGTGTGGGGGTGTGTGTGTGTGGTGTGATTCCACCCTCCTACCCTAAACCCCAGGAATAATGTGATGCTGAAGCAATACAGCCCATGCCAATGAGAGGTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGATTCTACCCTCCTACCCCTCCCATCCCTTTGGGGAGTATCAGCTAGCACGGTCAAAGACTGTCCAGACCAGCTGTGTCTTTTGGGACCTAAGGATAAAGTGACTTCACCAGAGTTTTCAGAGAACTGAAAAGGAAAAATCATTCTTTGCAG
Seq C2 exon
GAGTTCTTGGAAGCAGATAATCGCCAGCTGCCCAATGGTGTTTACACAACTGCAGAGCAGCGTCCGAATGCCTACATCCCAGAAGCAGATGCCACTCTTCCTTTGCCAAAACCTTATGGTGCTTTGGCTCCTTTTAAACCCAGTGAACCTGGAGCCAATATGAGGCACATAAGGAAACCTGTTATAAAGCCAGTTGAAATCTGAATATGTGAACAAATCCAGGCCTCTCAAGGAAAAGACTTCAACCAGGCTTCCTTGTACCCACAGGTGAAAAATGTGAGCATAATACTTCTAATATTATTGATAAGTAAGGTAACCACAATTAGTCAGCAACAGAGTACAACAGGGTTTCTATTTACCCACCAACTACTATACCTTTCATGACGTTGAATGGGACATAGAACTGTCCTACATTTATGTCAAAGTATATATTTGAATCGCTTATATTTTCTTTTTCACTCTTTATATTGAGTACATTCCAGAAATTTGTAGTAGGCAAGGTGCTATAAAAATGCACTAAAAATAAATCTGTTCTCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-CCDC146:NM_020879:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCATGAAACAAGCCCT
R:
GCCTCATATTGGCTCCAGGTT
Band lengths:
353-1815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)