BtaINT0035046 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69304140-69304564:-
Coord C1 exon
chr21:69304320-69304564
Coord A exon
chr21:69304246-69304319
Coord C2 exon
chr21:69304140-69304245
Length
74 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CGCCTGTCCTGCGTCCTCAGGCA
3' ss Score
9.57
Exon sequences
Seq C1 exon
ATGAAGCAGGGGGGCCGTGGGCCAGGTGCCGCCCTAGAACATCAGCAGGAGATTTCCAAGATAAAATCTGAGCTCGAGAAGAAAGTCCTGTTTTATGAAGAGGAGCTGGTGAGACGCGAGGCCTCCCACGTGCTGGAGGTGAAGAACGTGAAGAAGGAGGTGCACGACTCCGAAAGCCAGCAGCTGGCCCTGCAGAAAGAGGTGATGGTGCTGAAGGACAAGCTGGAGAAGTCCCGGCGAGAGCG
Seq A exon
GTGAGTGCGCGTGTGGGGGCAGGGCCGGGGGCGCGCCGCGGCCGGGGGCCCTGACGCCTGTCCTGCGTCCTCAG
Seq C2 exon
GCACAGCGAGATGGAGGAGGCCGTGGGCACCATCAGGGATAAGTACGAGCGGGAGAGGGCGATGCTGTTCGAGGAGAACAAGAAGCTGACTGCCGAGAACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGTGAAGAACGTGAA
R:
CCCGCTCGTACTTATCCCTGA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]