DreINT0043790 @ danRer10
Intron Retention
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18541384-18543983:-
Coord C1 exon
chr20:18543736-18543983
Coord A exon
chr20:18541490-18543735
Coord C2 exon
chr20:18541384-18541489
Length
2246 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TCCCATTTCTGTACCCACAGGCA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTGAAGCAGGGCGCAGGTCGTGCGTCAGGCCTCGGTGCAGAGACTCAGCAGGAGCTCACCAAACTCAAGTCTGAGCTAGATAAGAAAGGACTGTATTATGAGGAAGAGCTGGTGAGACGTGAAGCCAGTCACACTACAGAGATGAAAAACCTGAGGAAGGAGCTCCAGGACTCTGAGGGTCAGCAGCTCTCCCTGCACAAAGAGCTGCTTGCGCTTAAAGAAAAACTGGAAAAGGCCAAGAGAGAACG
Seq A exon
GTAAGATAATCTGCTGTCTGGGTTGTGGGTTAATGCCAGTTGATTAGATTTTTAACTAATGTAATAAATTGGCCATGTTTATTATTTGGCTGATATTTAATTTAATTATGAGTTTATGAAGGTCAGCACTTGCCTAATTGTGATGTTTACAATGTTCATATAATTTTTAAATGCAGACTTTTTATTTACTGTAAATAAACACACACTGTACAAAAGATTTGGGGTCTTTGAAATGTTCAGAGTTTTAGTGGTAACATAAATTGTTCCAACAGTTTTTATTTTATTGTTTTTAAATGTGATGCATTTTATTTATTTTAAATACGATACACACACACATACAGAAACACAACTTTACAAAACAATTTTGTGTTACTGATATTTACATTTATATATAATTTGACCTTCTACAAAGATTTTACATCTAAATATAAATAAACATTTTCTAAAGTACAAACATGGCTGTCTGTATTTAAATTACAGGTGGGTATAGATTCATTGTTTTAATCTAGATTCATCTAGATTTATCTCAGAATTAATCTAGATTAAAGTGGCTCATTTAAATTCTGCTGAAGGCATTCAGAATCTGCGCGCTACCCAAATAATAAGTCTTTGAGAACGGGTTTCTCAAGCCAGGTGGTGCATTAGACCAGGGCTCATCTTCTGCTTGCAAAATGCGTCACAAACAGCTTGAGAAACTGTTACTATAATAATGAAAATAATTTATGTTCAATAAGATGTATTTGTTTTTACTAACTGTTTATTCAGTTAAACGTGAATTTTGAACTGTAGGCCTACATAAGGTCCAAACAGCGATTTTTGATCACCTTAATCCGGCTAAAGTCATAACTGAACTAAACAGAAATGGAGTTAAGATGTGGAGTATGCATATATTAGTGGCATTATTGAAGTAAACATCGCAATCTATTACCGTCATGTAGGACTTTTCGTAACATTTTCCACCAAGATCCACACACACGGCTTACAGTAAAGGACCACACAAACACGCACATCGCAAAATGCGGAAGTATTTTTTTCTTTCCAGTTGTCGTGCGTTATTAAATTCCATAATAATCTCACCTGTCCTTAAAGCCTATAACAGCCCACCACTAATTTATACAAAATAAGTACACACATTGCACACATTTAAATTATGCCAAAACAAACTTTTATTTTGGATGCGAACAAGCAAAATAAATTCTGGCCCATCACTAATTTTTATATATTTTTTAAAATGTCATTTATTTCAAACTGAATAAAACTGAATAATAATGATCTATGAGAATCTTTCCATTTGAATCTGTAGCTTTTACAATCTTTAAAAATTTGATAATGCACAAGAGATGCTTAAGTTAGTTTTTCAGAAACTGTTTAGTTTTTGGTAAAGGAATGAAAATGAACAAAAATTCTGATTTTTAACTGCAAAATGTATTTTTCAAATATATAACAATTTTTATATATAAAAAAACCATTTTGAGGGATGTAAGCAATAACAATGGTCCAAACTTATTTCCTGTTTTACGTTTTTCATTTTACAAGAATCCTGAAAGGTCCACATATCGATAAATAATGGTATGACAGCGTTTGGATATGATTTAATTGCCTCTTGTTACAGTTATTAAAATAGTTTTACAACAAACAGGAAATGTTCATGGGCCAGTGACATCACCACATTGAAATGGTCTAATGAGCACCTTTAGGTCCAAAAACGGTGAAATTGTCTGTGAGAATATATTAGTGTGACAGACTTTTGTGAAATTTATTTTCGCGCACTAAGATGTTTTTGGGACGCAGTTTTATTGATAAGGGTGGATATCTAATTCTTTTGATGTATGTAACCATTGCAGCAAAGGTTTACCAGATTTCTTTAATCTAAGGTAATATATATTGGTTTGATTTTGTTTCATTAACAGTGAATAGACTCGTTTAATCAATCTAAAAGTTTTTAAAAGTCACTAATTATAATTTTTTATTATTTGAAAATGTATACTTTTTTGAATAATTGTAACATCATAACTGCAGAAACAGCACTTCTCAATACTTATACAATACAATATGGATTTCAGATGTTTTTATGTGGATTAAATAAATATTGCATGTTCAAATGAACCAAAAACACTGCTCATTTTTAATATTTTACAGACAGAACTTTAATCAATAACTTTGATTTTTAAATCAAAAGACAAAGTCTTGTAATACGTAATAAACTTAAGTCGACCACTCATGCCCTCCCATTTCTGTACCCACAG
Seq C2 exon
GCAAATTGAGATGGAAGAGGCCATTAATGCCCTGAAAGAGCAGTATGAACGTGAACGCAACCTTATGAGTGAAGACAACCGCAAACTCACTGCAGAAACAGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383:ENSDART00000049437:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(30.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]