RnoINT0032641 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135771449-135771885:-
Coord C1 exon
chr6:135771641-135771885
Coord A exon
chr6:135771555-135771640
Coord C2 exon
chr6:135771449-135771554
Length
86 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TCTCTCCCTCACCTCCACAGGCA
3' ss Score
11.09
Exon sequences
Seq C1 exon
GTGAAGCAAGGAGGCCGGGGGCCGGGTGCCACGTTAGAACATCAGCAGGAGATCTCCAAAATCAGGTCAGAGCTTGAGAAGAAAGTCTTGTTCTATGAGGAGGAGTTGGTCCGCCGAGAGGCCTCCCATGTGCTAGAAGTAAAGAATGTGAAGAAGGAGGTGCACGAATCTGAAAGCCACCAGTTGGCCCTGCAGAAAGAGGTCCTGATGCTGAAAGATAAGTTAGAAAAGTCAAAACGAGAACG
Seq A exon
GTAAGTGTTGCGATCTCCAGGTGAGAACGGAAGCTCGCCGCCATGCTGCAGGCGGTGGGTGAGTGCTCTCTCCCTCACCTCCACAG
Seq C2 exon
GCACAGTGAGATGGAGGAGGCCATAGGTGCCATGAAAGACAAGTACGAACGGGAGAGGGCCATGCTGTTCGACGAGAACAAGAAGTTAACAGCAGAAAACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAAGAAGGAGGTGCACG
R:
TTCTCGTCGAACAGCATGGC
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]