GgaINT0056366 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52444231-52444756:-
Coord C1 exon
chr5:52444512-52444756
Coord A exon
chr5:52444337-52444511
Coord C2 exon
chr5:52444231-52444336
Length
175 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTATTTCTTGTCTTCCTTAGGCA
3' ss Score
10.19
Exon sequences
Seq C1 exon
GTGAAGCAGGGGGGGCGGGCAGCAGGTGCCACACTAGAACATCAGCAGGAGCTTTCCAAAATGAAGGCTGAGCTGGAAAAGAAAATCTTATTTTATGAAGAGGAGCTGGTCCGGCGAGAAGCATCTCATGTTCTAGAAGTAAAAAATGTGAAAAAGGAAGTACACGATTCAGAGAGCCATCAGCTTGCACTGCAGAAAGAGATAATGATACTGAAGGATAAATTAGAGAAAACGAAGCGAGAGAG
Seq A exon
GTAAGTTTTAGGGACGTGATTGATAACCAAGGATTTCTTTTCTATGTGTGCTGCATTGTATAGGTAACAGCTCAGGATGGTGTTTCACCTTGATTCTGTTTATGTTTTTCTGAAAATCTCAGTCTACAGATTCTGCAGTCTTACTGTACATGTTTGTATTTCTTGTCTTCCTTAG
Seq C2 exon
GCATAGTGAAATGGAGGAAGCAGTGGGATCAATGAAAGAGAAATACGAGCGTGAAAGATCTATGCTCATAGAAGATAACAAAAAGTTAACAACAGAAAATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.402 A=NA C2=0.528
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(22.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGTGCCACACTAGAAC
R:
TGATCCCACTGCTTCCTCCAT
Band lengths:
257-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]