BtaINT0035071 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69315156-69317273:-
Coord C1 exon
chr21:69317174-69317273
Coord A exon
chr21:69315357-69317173
Coord C2 exon
chr21:69315156-69315356
Length
1817 bp
Sequences
Splice sites
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
3' ss Seq
TGCCCGCCCTCTCCCCTAAGGTG
3' ss Score
10.79
Exon sequences
Seq C1 exon
TAACAGAGACATTAAACCTGACAATGTCCTTCTGGATGTAAATGGTCATATCCGCCTGGCCGACTTTGGATCCTGTTTGAAGATGAATGACGATGGAACT
Seq A exon
GTAGGTATTTTTGTTGAAACTTTTCCATTTGGTTTTGTGTTTTGCTTGCAGTTAGAAGGGGCTTGTTTGCATTTTCAATTTGAGATACAATTAAGAAACCAAGTTTATTAACGTAAATTAAGACAAGTCCATTTAGAAAACAGTTGAAATTTTCTATTTACGGTTAAAACATCTTGATTGCTTCCTGTGTTCGAGAAAGTGATCTGTGTGCCTTCTGCAGAGAGGAGTTCAGGTGTCCTCAGATCCCCGGGGCCACTCCCGGGCGCCGACCCCACGGTGAGAGAGGGGCAGCCGGCCAGTGGGCAGACCTGAGCTGGGTGTCGGTGCCTTCTCGTTTCTGTCTGGGGCAGGACTTCCTGAATGGGGGTACCCCCCCCAAGGGCCAGCGGACGCTCCCTCTGCAGAGCGGGAGGACACCCCCGGAGTGGCCATCCCGAGCCCGATGGCCAGGTGGCCTCGGTGGGCCCCCCGCCTCCCTCGGCTGGCTCCAGCACGCAGCTCCACTGCGTCAGGGACTCGTCTGCATCCTTCCCGGTGGCCCCCGTCGCAGTTTGGGTTTTAGGTGTTTTGGGAGTCTTTTAAAAACCCACACGAGTCATAAAGTCTACTGTAACTGCTTCTCCAGAGAGAGCAGCCCCTGCCCCACCCCTTGCTGTAGGTTTTCAAGCAGCAGTAAAAGAACATAAAGCTGGCAGCACGTGACAGTGTTTTAAAAAGAGCGAGTCAGTTAACTCTCTCCACAAAGCCAGTCTCTTATTTCTAATGTGATGGGTCTATTGGTGCTGTCCCCAAAGCCAGTCTTCTAACGAGGGAGCTCTGGCCTGAGCTCCGCGTGCTGGGCACCTTTCCCCGGGGGCTCACCCACCTCACCTCCCAGTAGCTGTCCCCTGCTGCCCTGTCCGACTCCTGAGGACTCCCCGCTGAGTCCTGCCACCGGGCCCTGGGCTGTGACCAGGGAGAGGCTGGTCTTTTCGAGGACAGGCCTTCTTGGCTGTTGTCGTCGCGTCTTGCTGACCCCAGTCCTTTGGACTCCACATGCTCTGAGGCCGGTCTGTGGCCTCTCAGCACACCCAGCCCCCACGTTGTCTCCGTGATGGTTGCAGCTCCCCACGGAGGGCGTGTCCAGCACCCAGCGGGTCCCTGGACCTACTTCCAGATGTTCCAGTTTGGAGCTCGAGGGTAGGGTGTGGGTGATCAGCCCGAGCTTCCCCTGGGAGCGTGTCAGAAAGGCAGGATCTTAGAATCTCTCTCGCAAGCGTGTGGTGTCCATGCACGTACAAGTCTGAGGCGGCCTGGCCTGGACGCACGGGGTGCCTGGACTGCACTTTGAGCCGCGATGGGGAATGTGGGGCTCCAGTGCTGTGTGGGGCTGGGTGGGCATCTAGGGATTGAAAAACCCGGCGGGCAGGAGAGTCTGGTGCATTCTGGAAACTGTCCGATGTTTAATGCTGTAAAAATAGCTCTAAGTTGTCTCTGACTCTTGCGATCCCATGAACTGTAGCCCACCAGGCTCCTCTGTCCATGGAATTCTTCAGGCAAGAGTAGTGGAGTGGGCTGCCATTTCCTTCTCCAGGGGAACTTCCCGATCCAGGAATTGAACTCAGGTCTCCCACATTGCAGGCAGATGCTTTACTGACAGAGCTACGCGGGAAGCCCTGGTTTAGTGCTATAGGAACATTTATTTGCATTGAATTTTTCATTATGAGGTTTTTAAATCATGACCATGTGCCAGGTTTATCCTGTGATTGTTTCTTCATCCACTGTCTCCTAGAGACGTCCTCAGGTTTCCCTTCACCTTGCCCGCCCTCTCCCCTAAG
Seq C2 exon
GTGCAGTCCTCCGTGGCCGTGGGCACCCCGGACTACATCTCCCCAGAGATCCTGCAGGCGATGGAGGACGGCATGGGCAAGTACGGCCCCGAGTGCGACTGGTGGTCTCTGGGCGTCTGCATGTACGAGATGCTGTATGGAGAGACCCCGTTCTACGCCGAGTCCCTCGTGGAGACCTATGGGAAGATCATGAACCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGACATTAAACCTGACAATGT
R:
TGGTTCATGATCTTCCCATAGGT
Band lengths:
295-2112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]