GgaINT0056357 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52455582-52456771:-
Coord C1 exon
chr5:52456678-52456771
Coord A exon
chr5:52455783-52456677
Coord C2 exon
chr5:52455582-52455782
Length
895 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
ATGTTTGCCTTATTTTTAAGGTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GGACATAAAGCCTGATAATGTTCTTTTGGACATGAATGGCCATATACGACTGGCAGATTTTGGGTCCTGTCTGAAAATGAGTGAAGATGGCACA
Seq A exon
GTATGTATGAAGCAGAATTAAATTGGGTCACTGATAGTGGGATCTTTTAAGCAACTTCCTGGTCCTAATGCTATTAAATGTATTAAACTATTAAACACTTTTAGTGTAAGCTTTTTGACACGCTAAAAATTGAGGGAAATGTTCAACAAATTTATAAGAAACAGTTTTTGAAATCTTTGTTTCCTGGCATGTGGTGTCCAGCAGTTTTGGCACAGACTCAGGTCTTGGTGGCATTCTGTAGTCAAAAAATGTCTTTCAAGAATTTACCACCTTAAAAACAAAATGAATTGGAAGGAGCTATTGAAACTTCACGTGAACCCTTAAAGTGTGTTCCTAGAGCTGCTCCTAGAGCTGCTCCTCCACTCCCTGATGGTCGAGGCTTTCCTACTACATGGACAGACACAAGGAAATTAATTAGCTATTCCCTATATTGCATCCACAATTATGCTACGTTGGTATTAAACCAATTTCACACCTAATAAAAATAGGATACTACTTGCCCTGGAAACTTGTTTTGCTATTTTCAGCTGAAACTGTAAACTGAAACTCAGGCATAGAACTCAAACTGCCTGCTTATTAATTTCTCATTTCAATTTCTGGCAAACAGTTGCAGTTGAAAGTGTAAAAGCATGTGTACACACAGGCAAAACATTTTCTTGGCTTCTTGAAAACAGGTAAAACTATTTGGAGGTTTTACTGTGTGCAAATTAAAATGTAGACTTTGTTACTTTCTTAATACATTCTTTGTTTCATTGCTGTGATTTTTTTTTAATAATTAACTTCCTTTTCTAAAATTATGTACTGATGTCTCTGTCAGAAATACTAAAGTATGAGTGAGAATGTTGCTATAGAGAACCTGAAAACTTACCAGAATTATGTTTGCCTTATTTTTAAG
Seq C2 exon
GTGCAGTCCTCTGTAGCAGTGGGTACGCCAGACTACATCTCCCCTGAGATACTGCAAGCCATGGAGGATGGAATGGGAAAATACGGGCCTGAATGTGACTGGTGGTCACTGGGGGTCTGCATGTATGAAATGCTTTATGGTGAAACACCTTTTTATGCAGAGTCATTAGTGGAAACCTATGGGAAAATTATGAATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATAAAGCCTGATAATGTTCTT
R:
TCGTGATTCATAATTTTCCCATAGGT
Band lengths:
294-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]