GgaINT0056357 @ galGal4
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49850963-49852152:-
Coord C1 exon
chr5:49852059-49852152
Coord A exon
chr5:49851164-49852058
Coord C2 exon
chr5:49850963-49851163
Length
895 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
ATGTTTGCCTTATTTTTAAGGTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GGACATAAAGCCTGATAATGTTCTTTTGGACATGAATGGCCATATACGACTGGCAGATTTTGGGTCCTGTCTGAAAATGAGTGAAGATGGCACA
Seq A exon
GTATGTATGAAGCAGAATTAAATTGGGTCACTGATAGTGGGATCTTTTAAGCAACTTCCTGGTCCTAATGCTATTAAATGTATTAAACTATTAAACACTTTTAGTGTAAGCTTTTTGACACGCTAAAAATTGAGGGAAATGTTCAACAAATTTATAAGAAACAGTTTTTGAAATCTTTGTTTCCTGGCATGTGGTGTCCAGCAGTTTTGGCACAGACTCAGGTCTTGGTGGCATTCTGTAGTCAAAAAATGTCTTTCAAGAATTTACCACCTTAAAAACAAAATGAATTGGAAGGAGCTATTGAAACTTCACGTGAACCCTTAAAGTGTGTTCCTAGAGCTGCTCCTAGAGCTGCTCCTCCACTCCCTGATGGTCGAGGCTTTCCTACTACATGGACAGACACAAGGAAATTAATTAGCTATTCCCTATATTGCATCCACAATTATGCTACGTTGGTATTAAACCAATTTCACACCTAATAAAAATAGGATACTACTTGCCCTGGAAACTTGTTTTGCTATTTTCAGCTGAAACTGTAAACTGAAACTCAGGCATAGAACTCAAACTGCCTGCTTATTAATTTCTCATTTCAATTTCTGGCAAACAGTTGCAGTTGAAAGTGTAAAAGCATGTGTACACACAGGCAAAACATTTTCTTGGCTTCTTGAAAACAGGTAAAACTATTTGGAGGTTTTACTGTGTGCAAATTAAAATGTAGACTTTGTTACTTTCTTAATACATTCTTTGTTTCATTGCTGTGATTTTTTTTTAATAATTAACTTCCTTTTCTAAAATTATGTACTGATGTCTCTGTCAGAAATACTAAAGTATGAGTGAGAATGTTGCTATAGAGAACCTGAAAACTTACCAGAATTATGTTTGCCTTATTTTTAAG
Seq C2 exon
GTGCAGTCCTCTGTAGCAGTGGGTACGCCAGACTACATCTCCCCTGAGATACTGCAAGCCATGGAGGATGGAATGGGAAAATACGGGCCTGAATGTGACTGGTGGTCACTGGGGGTCTGCATGTATGAAATGCTTTATGGTGAAACACCTTTTTATGCAGAGTCATTAGTGGAAACCTATGGGAAAATTATGAATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATAAAGCCTGATAATGTTCTT
R:
TCGTGATTCATAATTTTCCCATAGGT
Band lengths:
294-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]