HsaINT0031703 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102983556-102986580:-
Coord C1 exon
chr14:102986487-102986580
Coord A exon
chr14:102983757-102986486
Coord C2 exon
chr14:102983556-102983756
Length
2730 bp
Sequences
Splice sites
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
3' ss Seq
GCACCTCCTTCTCCCCTAAGGTG
3' ss Score
8.66
Exon sequences
Seq C1 exon
AGACATTAAACCTGACAATGTCCTTTTGGACGTGAATGGTCATATCCGCCTGGCTGACTTTGGATCATGTTTGAAGATGAATGATGATGGCACT
Seq A exon
GTAGGTATTTTTGTTGGAGATTTTCCATTTGGTTTTGGGTTTGGCATATAGTCAGAAGGGAAGTTTTCAATTTGAGGTACAATTAAGAAACCAAGTATATTAATTCAGAAAATGAATCCATTTTGGAGATAGTTGAAATTTTCTGTTTGGGGAGTTTTGTTTCCCAAATAAAAATTAAGTTGGAAAGCATCTTTATTGCTTTTTATGTTTACAAAAGTAATATGTGTGCCTTCCAGAATGGGAGTTGTCAGGTTTCCTCAATCCCAAGGTGGCTAAAAGCATGCCAGCCCTGTAGCAGATCGAGGGCGCTCCCTGCTTCTTCCTTAAAGGGCCCTGTCCAGGCTGGTCGGGTGGGCAGGCATTAACCATGTAACTGTACTTTCTCACTTGTGTTGGGGCAGGTAACTTCCTGCTAGGGGTTTCCTCTCTATGGGTGTTGTAGACCTAGAAATAGAGTCCTAGGTGCTCAGTGTTACGGGGCCAGCTGACACTCCCGCCAGCAGGGAAAGAACAGGAGGTTGCCCCCGGATCGGCTATCACCAGGAGACCCAGGCTCAGGCCACAGGCCCTGTGGTCTCCACCCCGCAGTCAGACCAGCGTCATGGCCGAGTAGCCTGATGGGGGCAGTCCCAGCTCTGCTCACACCCTGTTGGCAGCTGCTTGCAGCAAACTGCTTTCACTGCGTCTGTGGCCACTGTTGCAGTTTTGTTCTTACATGTTTGGAGTCTTTTCTTTTTTGAAACCTACACTTATCATAAGGTCTAACATCAAATAGTTTTCCGAGAGAGCAATCCCTTTCTTGCCTACTGGCGGATTTTCAAGCAGTAGTGGAAGCACCCATGTGACTGGCTTCAGTTGACAGCGTTTTATAAGAAATAAAGCAGTTTGCTCATTTTCATTCCACAAAGCCAGTCTCTTGTTTTTAATAGTCTTGACCACATATTGATTAATTGGTAGGCGGGTGCTGTCCTCCACTCCAGTCTTCCAGTGACTAGAACAGGTCTGAACCAGAACATGGGTTACCCTCCACACCTCCACACCACCCTGTCACAGTATAACCAGAGCATGGGTTACCCTCCTGACCTCCACACCACCCTGTCACGGTATAACAAGAGCATGGGTTACCCTCCTCACCTCCACACCACCCTGTCACGGTATAACCAGAACATGGGTTACCCTCCTCACCTCCATACCACCCCGTCATGGTATAACCAGAACATGGGTTACCCTCCTCACCTCCACACCACCCCGTCATGGTTTAACCAGAGCATGGGTTACCCTCCACACCTCCACACCACCCTGTCACAGTATAACCAGAGCATGGGTTACCCTCCTGACCTCCACACCACCCTGTCACGGTATAACCAGAACATGGGTTACCCTCCTCACCTCCACACCACCCCGTCATGGTATAACCAGAGCATGGGTTACCCTCCTCACCTCCACACCACCCCGTCATGGTTTAACCAGAGCATGGGTTACCCTCCTCACCTCCACTCCACCCCGTCACAGTAGTTGTTCATCGTGGAGTCACCGCCCAACACCCCAGTGGTCCCGCTGTCTGTAGGAGCTCCTGTGGGCTGGCCACGCACTCGTGCAGGGAAGTGATAGAGGTGGAGTTCTCTGCTGATCCATTCAGCCTGAGCAGTTCTCACACCACTGGCTCTGGGGTGCTGCTTGGACCCTGTGTCTCTCTTCCCAGAGGGGACCCTCGGGAGAGCCTGGCCTTCCCCAGACAGGCCTGTGGTTGTTGTCTCCAGTTCCTGCCTGAGCCTCAGTCTTAGAGACTCAGCCCGTCAGGATGGCCCTATACTCTCCATCGTTCTCTCTGCTTGGATGATTTCTCAGCTTCACCAGGCTCCTCCCGCTTGCTCTGAGGTGGCCCGTGCCCTCGCAGCTTTCTGCAGAGGTGTCACTGTACTCTGGCACCTGCCTGCTGATGTAGATAGCAGGGGAGCTGTTTTCTCCCTTGCGGGGGTAGGAGCGGTCTTAGCCTCCTGGTGCGCTGTCCAGGGAATGCCTGAGCACCCGGCTAATGCCTGGACCAACTTCTGCATGTTCCCATGAGGAAGACCACAGGGTCGGCTGCAGGTGAGCAGCCTTAGTACCCCCAGAAGCTTATTAGAAATGCAGCCTCTTGTGCCCCACTGGAGTCTTTATTCTAAAAACAGACCCTACACAAGACTCCCTGCGTGCTGCACATGAAAATCAGAAAGGCTGGCCTGTGCACATGTGGCCCCTGCATCACACTGGGAGCAGTGACAGAGAGTGGGAAATGCCAACCCTGGGGGATTGGAGAGGCACTGTTTGGGGCTGTGGCTGGTATTTGGGTATTGACAGACCATGTGTACAAGAGTTTCATGCATTCTGGGAGCCGCATAATGTTTAGTGCTTCAAAAGGATATTTATTTGCATTGAATTTTGCATTATTGAGGTTTTTAAATTCCGTTTTGTTTCGTTAGAGACAGGGTTGGGGACCATGTTGCCCGTGTTGGCCTTGAGCTCCTGGGCTCAAGCGGTTCTCCGGCCTCAGCCTCCCAAGTAGCTGAGGCTACAGGCTCGAGGCACTATACTCAGCTTGAATTACTGGGTTTAAAAAACACGATCATTCATCAGTTTTATTCTATGATTATTTCATTTTCTGCCTCCGCTATATTTTAGAGAAAGTAGTTGGAAATATGTGATTGGAGATGCCCTAGGGTTTCCTTCAGCACCTCCTTCTCCCCTAAG
Seq C2 exon
GTGCAGTCCTCCGTGGCCGTGGGCACACCTGACTACATCTCGCCGGAGATCCTGCAGGCGATGGAGGACGGCATGGGCAAATACGGGCCTGAGTGTGACTGGTGGTCTCTGGGTGTCTGCATGTATGAGATGCTCTATGGAGAAACGCCGTTTTATGCGGAGTCACTCGTGGAGACCTATGGGAAGATCATGAACCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(24.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development