BtaINT0035072 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69313272-69315356:-
Coord C1 exon
chr21:69315156-69315356
Coord A exon
chr21:69313521-69315155
Coord C2 exon
chr21:69313272-69313520
Length
1635 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
CTGCCCCCCTGCCCCCCCAGGAG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTGCAGTCCTCCGTGGCCGTGGGCACCCCGGACTACATCTCCCCAGAGATCCTGCAGGCGATGGAGGACGGCATGGGCAAGTACGGCCCCGAGTGCGACTGGTGGTCTCTGGGCGTCTGCATGTACGAGATGCTGTATGGAGAGACCCCGTTCTACGCCGAGTCCCTCGTGGAGACCTATGGGAAGATCATGAACCATGAA
Seq A exon
GTAAGCCGTCGCACTTCCACCCCGTGTGTGTTCGAGTCCCTGGGGAAGAGGGATGGGTGGAGCAGGCTGGGCGGCCAGACGGGTGTCCGAGTGGGCTGCTGACCCGGGAGACGAGAGCGGAGGGGGCCGCTCCCGTTCCCTGGTGGAGGGTGGTGGGTCCGTTGGGCCAGAACCCCTGCAGGAGATGTGGGCTTCGGGAGCTAGACACAGGTCCGTGCGGGGCCAGGTGGGCGGGAACTGCCCAAGGGGGCTCTCGGGCCCCTGCCGCCTGTGTGCCCGCCCTTCCTTAGGCGTCAGCTCTGCCCCTCCAGCCTGTTTGCCCCGAAGTCGTCAGGAGTGGATCACACGTCTCAGCACAGTAGTGCTCTTAGTCCTTTCTTGAGCCTGTTTCTTTTCCTCCTGCTTTCCCCCCTTTTCCCAGGTACTCATTTTTCACTTCTATTTCCCTCATTTTCTGTTTATTATTTCTTCTTCCTTCTAAGATTTTTGTCATCTGTGTTTTTTCTTTTTACACCTTTCCCCACGTCCTTCTGACTCCAGGGTCAGCCTCTCTGCCGGTTGGCTCACAGCACCCTTCCCCACCTGCTCGGTCACTCACCCAGACAGGTGCTCACTTGTCTGCTCTCTCCTCCCAGCCTGGTCTCCCAGTATTTGCTCAGATAAGGAGCAGATTAACATTAAAGTCCTAAAGCATCTTTCTCTTAACTCAAGAAAAGTTATTCCTTAAAAAATTTGTTTTCAAAGTAGGAATGTATTTTTATTTATAAATTAATATATACTATTAAAAACTTCAGACATGCCGAAGTGCATGCAGTAAGTTGATGAAAGGCACCCTGTGAACTTCTGGTGGTAAGCGTGGTGAAGGGAATAAGTGGGACTTGCTTGCATTCTAAGGCCTGCTGTCTCCCTGAGCGCCTGCCGCCTGTGGGCACCCCCACCCCCACCCCGGTGGTCTCTGATCATTTATTCCGTCTCCGCTGCAGCCCCGTGAGGCAGCGCTGCCGTCCCTTCTAGAGATTACAGGTGAGGCCTGAACCGCAGGGGTGGCTCAGCACACAGGCCCACGGTGCCCTGGTGCGTGTGTGGCCTTGTGAACCTCCTAGCATGTGGGAGGTGGGGACTGTTTAAATAAATGGGATCTCGGTCACATGTGGCCAGGGTTCCGCTCGTCTTTCTCCTCAGTGCTCAGAGGCAGACCTTACTTACCGTGTGTATGTGTGCAGTGTATCTCGTTTTAGCAAGTCCCTCTGTGATGAGCTTTGAGGTACTTTTCAATTTCCTTGGTCAGAGCAGAATGGCGTCACGAGCATGTCGTGTGTTCTCATTGATGCTGTGGGCAAAACTCGTACTGAAGGTGTGCCCGTTTCTCGCCCACCTGCAACCTGCTGTTGGTGTTCTTTGCTACCTTGATAGGTGGGCATTTATCACCGTTTTAGTTCACGTGCAGGGTGATGACAAGTCCACCGTGACTAACCAGCGAGACTGAGGGTTTTCTGGAATGAAGCTCCATCAGCTTCGGCTGCGCTTGGCCACTGGGACGCAGAAAGGGACTGTAGCGCTGCAGCTGCGCCTCTGCTCTGTTCCCCGTGATGCCTGCGTGCCTCGAGTCCCCTGACTGCCCCCCTGCCCCCCCAG
Seq C2 exon
GAGCGGTTTCAGTTCCCGTCCCACGTCACAGACGTGTCCGAGGAGGCCAGAGACCTCATCCAGAGGCTGATCTGCAGCCGGGAGCGCCGGCTGGGGCAGAACGGGGTGGAGGACTTCAAGAAGCATGCCTTCTTCCAAGGGCTGAACTGGGAGAACATCCGGAACCTGGAGGCGCCCTACATCCCGGATGTGAGCAGTCCTTCCGACACGTCCAACTTCGACGTGGACGACGACGTGCTTCGGAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.280
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.4=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACTACATCTCCCCAGAG
R:
TCCAGGTTCCGGATGTTCTCC
Band lengths:
344-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]