MmuINT0032894 @ mm10
Intron Retention
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111325960-111327616:-
Coord C1 exon
chr12:111327416-111327616
Coord A exon
chr12:111326209-111327415
Coord C2 exon
chr12:111325960-111326208
Length
1207 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGGCTGCCCCTCCTCCCCAGGAG
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTTCAGTCTTCCGTGGCCGTGGGCACACCTGACTACATCTCACCAGAGATCCTGCAGGCCATGGAGGATGGCATGGGCAAATACGGGCCCGAGTGTGACTGGTGGTCGCTGGGCGTCTGCATGTATGAGATGCTATACGGAGAAACCCCGTTCTACGCAGAGTCTCTGGTGGAGACATACGGGAAGATCATGAACCACGAG
Seq A exon
GTGAGATGCGAACGCTGTTCCAGCGCCTTCACGGGCTGGGGTGGGAGGGACAGGGAGACAGGGGCACACATGATATGGGGACACTGCACACATGGGACAGAAAGGAAGGCATGCTTCAAAGATGTCTCCTGTGTTCCAGCCCTGCAGTGCGTTTCCCATTGTGTTAGCCAAGCGCTGTGCGGGCCCCATGGCACACTTGTCTGTGCTCCTTGGTATTTTGAGAGCCAGAAATCAAGTCTGTCAGGCTCACTGTGGGCAGTACTTAACTGCTCAGCTATGATAGTTAATTAATTTACTTATGTATGTGTGACACGTGTGTGGATGTATGTGCCACAGTGCATATTGGAAGCCAGAGCATGACTTTGTGGCGTTTCCTCCTCTCTCTGTTGGTTCTGGGATCAAACTCCAAACACCAGGCGCCGCGAGGACAGGAATGGAACTGGTCCCCATGTACGGTGGCTTACCTGAGCTGTGGGAAGTGCACCTGGAACTCGGTTAGGGTTAGGTGTATTTTACCCACAAGCTGTCTTGCAGGCCCAAAGGGAATGCTTTTTTTGTTTGCCATTTTGGAATTAAAATTCTTTTAGCCAGTGGGGCAGTGGTGGCACACACCTTTGATCCCAGCACTCAGGAGGCAGAGGAAGAGGCTGGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTTCTAGGACAGCCAGGACTGATGTGCTAATTAATATCAAATAATATTAATCTATATATTTTGAGCGGATAAACCAAACAGCAGACCAGGCCAAGGTAGTTCCACGTGGGAGAGGTTTATTGTGCAGAGATAGAGGGGCGGTGAAGTGGGTAGAAGGGCAGAGAAGAGGAAAAAGAGAGAAAGGGGGAGAGAAGAAAGAAAGAGAAAGCGAGGAGGGGGTGATCCCCTAATTTATACAGAAAATGACGTCACACCAGTGAGGGTGGGAACTGAGCCAAGTGGGTTGTGGGATTGAGGGTCGTTGTCCTGGCAATGCAGGTCAAGGGTCACATGGTTAGGCTGGGGCTTGGAGTGTCCTGGTACTAACAAGGACTACACAGAGAAACCCTGTCTCAGGGCTTGGGGGTGGGGGAATTCCCTAGCTTCAGCTTACACCTGGTTAATGATGAAGTCAGGATTATTCTTGTGCTGTCCTCGACTTGGGTTTTCCTGACAGTCTTTGGCTGCCCCTCCTCCCCAG
Seq C2 exon
GAGCGGTTTCAGTTCCCATCCCATGTCACCGATGTCTCTGAAGAAGCAAAAGACCTTATCCAGAGACTAATATGCAGCAGAGAGCGCCGACTTGGGCAGAATGGAATAGAAGACTTTAAGAAACACGCATTCTTTGAAGGTCTGAATTGGGAGAATATACGAAACCTTGAAGCGCCCTACATTCCCGATGTGAGCAGCCCTTCGGACACGTCCAACTTCGATGTGGACGACGACATGCTGAGAAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279:ENSMUST00000041965:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACCAGAGATCCTGCAGG
R:
TGTAGGGCGCTTCAAGGTTTC
Band lengths:
345-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types