HsaINT0031704 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102980773-102983756:-
Coord C1 exon
chr14:102983556-102983756
Coord A exon
chr14:102981022-102983555
Coord C2 exon
chr14:102980773-102981021
Length
2534 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
GTTTTTGCCACCCCTTGCAGGAG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GTGCAGTCCTCCGTGGCCGTGGGCACACCTGACTACATCTCGCCGGAGATCCTGCAGGCGATGGAGGACGGCATGGGCAAATACGGGCCTGAGTGTGACTGGTGGTCTCTGGGTGTCTGCATGTATGAGATGCTCTATGGAGAAACGCCGTTTTATGCGGAGTCACTCGTGGAGACCTATGGGAAGATCATGAACCATGAA
Seq A exon
GTAAGACGTTGCATTTTTTTTTTTTTTTTGGTACCTGGCTCAGGCCTAAAGTACAGAGAGCACAACTAGTGCAGGAAGATCCGTTAGGAAGCAACGCGAGTAGTTGAGGAAGAGGTGACGGGGTTTGGACCAAACTGGGGACAGGCAGATTGGAGTAGACATTGGAGAGGGCATCCAGAGGCGGGGTCGGCACCAGGAGATGTGGGCGCCAGAGGAAGGGGAAGGAGGTTCTGAGGGTGACCCCCACCCCCACTCTCAGGGGAAGGACGCTGGCCTGCTCCAAGCTGGCTTCCTGGAGGGAAGGCAGGTTTCTGTAGACAGACGCGTCGTCTGCACAGGCGCATGGAGTGAGGCGCCCGGGGGTAGCCAGTGGGGAGGTCCAGGTGGGCCCTTTGACCTGTGGCTCTAGATTCACTGGTTAGGTGCCAACTTTGATTCTCAAGTCTGTTCCCCAGAAATCAGTCCCTGTAAATGATCATGTGTCTCCAGATGGTGGAGCCCTTCATCCTCCCCATCCTGTTTCCTCTTTTCCTCCTTCCCTTTCCGAACTGTTCACTTTCTCACTTCCATGTCACCTCTCTCCACCTCCTTTGTTTTCCTTTTTATCATTTTCTCTTCTGTCTGATATTTTTTATTTCTTTTTAAAAATTTTCCTTAGTCATGTGTCTTTCTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAGTGGCGCAGTCTCGGCTCACTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTGTCTTTTTATCTTTTTTTTTGAGACGGAGTTTCGCTCTTGTCGCCCAGGCTGGAGTGCAATGGTGCAATCTCAGCTATGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGTTTCCTGAGTAGCTGGGATTATAGGTGCCTGCCACAACACCTGGCTAATTTTTTTGTATTAGTAGTAGAGACAGGGTTTCACCATGTTAGCAAAGCTGGTCTCAAACTCCTGACTTCAGGCAATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCGCACCCAGTCAGTCATGTGTCTTCCTAATGCCGATTTCACCCTCTCTACCAGCGTGCTCATAGCATTTCCCTCCCCGCTGTCTCCTGTGCACATGACAGATCCCAGAATGATCCTGATTGAGTGCTGGCCTGTCCTCCAGCCAGGGCCTCCCACAGTTCGCTCTCACAGGGAGCAGATTAACACTGAAGCGGGAACTGGTTTTCCATTTAACTCCAAAGCAAAGCAAAAGTTACAGTTTTAAAAAACGTTTTTCCCAAAGTAGAAGCATATTTTTATTTGTAAATTAATATATACCCCCTATAAAAACTTCAGACAATGCAAAAATGCATATTGTAGATAATGAAAATTGTCTCATCCACTTCTTAGTGACAAATTCTGTTAAAGTAACAACTGGGACTTCGTTATTACTAAGAGCCTGCCAGCAGTCACTGAGTGCCGACCACCTGTGGGCTCTTGGGTCAGGCACTCCGTGAAGCAGGTGACATTGTTCTTCCTTTCTGTAGATGACAGAGGTGGTGGCTCAGCTCTCAGCCCACTCTACCATGAGGGTGTGTGGCCTCGGCAGACCTCAGCTCGTGTGTGTGCGTGCGCATGTGTGTGTTTAGATACGTGGCATCATGTTACATATCAACAGTTTTTTGTCATTGTATCTGTGGTGTCTTTCTATAGCAGCACACAGACATGTTCCTTTTTCTTTGTGCCCCATCTTTTTTGTTTTGAGCTGGAATCTCGCTCTTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACTTGCACCTCCCGAGTTTAAGCGATTCTCGTGCCTCAGCCTCCCAGGTAGCTGGGATTACAGGCCGCCACCACGCCCGGTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCTTGTTGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACTGTGCCCAGCCGGTATCTTTTTTAACGAGTCTCTTTTTTGATGGGCATGTAGGTAATTTGCAGTTTTCTTGGTCAAAATACAGTGCAGTCCTGAGCATGTTGTGTTTCCTCTTAGTAACTGCTTTTTTAGTGTGAGTTTCCAGAAGCGGAGCTGCCGTGACGCGTGCACTGTGCATTCTGACGGGGCTGCGCCTGTCCCTCTTCCCGCGCACGGCATGTTTCCCACATTCCTTGCCACTTCCATAGGTAAAATGTGTCATTTACATGCAGTGTGGTCACAAGTCTACAATGAGTAAAACCAGAAGGACCACTGGTTTTCTTGTTTGCCTTTTGGGAATGGAAATTTATTAGCTTTGGATTGCATTTAGTTCCCATGAAGTGACCTGCTTTGAAGCTACCATTTCTACTTTGTTTCCTATCATATCTGTACACCTTAAACTCTCTGAATGCGTCCACCTGTCCACCGGTGTTTTTGCCACCCCTTGCAG
Seq C2 exon
GAGCGATTCCAGTTCCCATCCCATGTCACGGATGTATCTGAAGAAGCGAAGGACCTCATCCAGAGACTGATCTGCAGTAGAGAACGCCGGCTGGGGCAGAATGGAATAGAGGATTTCAAAAAGCATGCGTTTTTTGAAGGTCTAAATTGGGAAAATATACGAAACCTAGAAGCACCTTATATTCCTGATGTGAGCAGTCCCTCTGACACATCCAACTTCGACGTGGATGACGACGTGCTGAGAAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development