RnoINT0032668 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135778833-135780110:-
Coord C1 exon
chr6:135779910-135780110
Coord A exon
chr6:135779082-135779909
Coord C2 exon
chr6:135778833-135779081
Length
828 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
GGCCGCCCCTTCCTCCCCAGGAG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTTCAGTCTTCCGTGGCTGTGGGCACACCTGACTACATCTCACCAGAGATCCTGCAGGCCATGGAGGATGGCATGGGCAAATACGGGCCCGAGTGTGACTGGTGGTCCCTGGGCGTCTGCATGTATGAGATGCTGTATGGAGAAACGCCATTTTATGCAGAGTCTCTGGTGGAGACATATGGAAAGATCATGAACCACGAG
Seq A exon
GTATGATGCTGTATGCTGTTCTGTCACCTTCACAGGCTGGGGTGGGTGGTCGGAGGCCAGCTGGGTAGGAGGGACAGGGAGGGGGGCAGAGGTGTGAGAACCCATTAGCATAAGGTGGGGGCACTGCACACATGGGACAGAGAGGAAGACGTGCTTCAGCGATGTCTCCTGTGTTCCAGCCCTGCGGCGTGCTGCTTGTGTTGGTGGAGCGCTGTGCGGGCTTGCGGGCCGTTCGGCGTGAATCCCCACGGCACACTTGTTCCTTGCTGTTTTGATAGCAGAAATCTAATCTGTCAATCTCACTTAGCTGTTCAGCTATGAAACTCTGTTTTAATTAATTTACTTACGTGTATGAAATACATGTATGTGGATGTATGTGCCACAACACATGTTGGAAGCTAGGGCATCCCCTTTGTGGCGTTTTCTCCTCTCTTTATGTTGGTTCTAGAGATCCAACTCCAGGCTGCAAAGCAAGTGAGTGTATTTTACCCACAAGCTTTCTTGCAGGCCCAAAGGGAATGGTTTTGGCCTTTTTGGAATTAAAATTCCCTAGCTTTAGTCAGGCAGTGGTGGCACAAGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGAGGACAGCCTGGGCTACACAGAGAGACTCCATCTCAGGGAAGGGGTTGTAATTTCAGCTTACACCTGGTTAATTATGAGGTCAGGATTACTTCTTGTGCTGTTCACACATCTCGGGTTTTCTTGGCTGTCCTCTGGCCGCTCCTTCCTCCACACATCTCGGAGTTTCCTGACTGCTTTTGGCCGCCCCTTCCTCCCCAG
Seq C2 exon
GAGCGGTTTCAGTTCCCATCCCACGTCACTGACGTCTCTGAAGAAGCGAAAGACCTCATCCAGAGACTAATATGCAGCAGAGAGCGCCGGCTCGGGCAGAACGGGATAGAGGACTTTAAGAAACATGCATTCTTTGAAGGTCTAAATTGGGAAAATATACGGAACCTGGAAGCACCCTACATTCCCGATGTGAGCAGCCCTTCTGACACGTCCAACTTCGATGTGGACGATGACGTGCTGAGAAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGCATGGGCAAATACG
R:
GTCAGAAGGGCTGCTCACATC
Band lengths:
344-1172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]