BtaINT0036094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008900 | CELA1
Description
Bos taurus chymotrypsin-like elastase family, member 1 (CELA1), mRNA. [Source:RefSeq mRNA;Acc:NM_174048]
Coordinates
chr5:28635955-28637016:+
Coord C1 exon
chr5:28635955-28636104
Coord A exon
chr5:28636105-28636864
Coord C2 exon
chr5:28636865-28637016
Length
760 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATAACCGGTTTTTCCTTCAGGCC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GGTGATTCTGGAGGCCCCCTTCACTGCTTGGTGAATGGCCAGTATGCTGTCCACGGTGTGACCAGCTTTGTATCCAGCCTGGGCTGTAATGTCTCCAAGAAGCCCACAGTCTTCACCCGGGTCTCTGCTTACATCTCTTGGATAAATAAT
Seq A exon
GTGAGTCCTCTCAAATGATGGGATGAAATACAGTCACCTGGAGATTCACGCATTGACTGGGGTGGGGAGCAAAAGTTGGGCAGGAGAAGCCATCACCTTCCTCATCGCCTTCAAATAGTTATTTACCCCTTTCCCTTCCCCTCTAGTGAACTTTCCCCTGATAGTGTTGCCATCCTGAGTTCCTCTTCACATACCTACTAAGCAGGCTTCACCATCTTGTTTACTACTTAGAGTAAGGTGGTGGCAACAGCAGACCTGAACCAGGTGCCTATCAGGGCTGTCCAAGTCAAGGCCAAGGGGAAAATGGCTTCAGAAAGGCCTGCACACTCCAGGCAAGGGAATAGGCACTAACATTCTCCCCCACCAGTTCTTTCTAAGGGCATCATGAGAATTTGCTCTACCATTTGGCAAGAGGTTTTACCACCTTAAACAATGGTTGAGGGCTAGGTGAGAATGTACCTACACTGACCTGGTGGTGGAGCCTCACACCATCCCACCTGTGCCCTCCAGCCTCCAAACACATTCTGGAGTCTTGTGGCATGAACCTTGACTTACAACCAGTTCAAGGTCTGCCACTATGTTCTGAGTATGTGCTTATAGCATTGAATTGTCCTGGACCAGTTAAAAACTTCTTCCTGCCTCCCACCCTCACAACTCCCCATAAACCCAGTACAGGGCCATACTCAACTAGGAGCCCTGAAGAAAAAAAAAAGGAGGTGAGCAGAAGTTGCTGACTGGATATAACCGGTTTTTCCTTCAG
Seq C2 exon
GCCATTGCCAGCAACTGAACATCTTCCTGAGTCCAGTGGTATTCCCAAGATGGTTCTGGGATTGACAGCAGAACTTGAGGCCATCAAGGAAAAAACCAGTCTAAGAGACTATTGAGCCAGATGTGGAAAAGCAAATAAAATCGAATATATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008900:ENSBTAT00000011718:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=94.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTCTGGAGGCCCCCTTC
R:
TTCGATTTTATTTGCTTTTCCACATC
Band lengths:
294-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]