MmuINT0034144 @ mm9
Intron Retention
Gene
ENSMUSG00000023031 | Cela1
Description
chymotrypsin-like elastase family, member 1 [Source:MGI Symbol;Acc:MGI:95314]
Coordinates
chr15:100504853-100505904:-
Coord C1 exon
chr15:100505755-100505904
Coord A exon
chr15:100505149-100505754
Coord C2 exon
chr15:100504853-100505148
Length
606 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ACATGCTGTCTTTTCTTCAGGTC
3' ss Score
11.52
Exon sequences
Seq C1 exon
GGTGATTCTGGGGGACCCCTCCACTGCATGGTGAACGGTCAGTATGCTGTCCACGGAGTGACCAGCTTTGTGTCCAGCATGGGCTGTAATGTCGCCAGGAAGCCCACCGTCTTCACCAGAGTCTCTGCTTACATTTCCTGGATGAATAAT
Seq A exon
GTGAGTCCTTTAAAATGATGGGTTGAAATTCTCTGGCGATCCAGGCGCTGGCTGGGTTGGACAGGAAACCCCAGGCTGGATATACTCTTCCTGGGCCCCTTCTCCCCCTCCACAGAGGCTCTTCCATGACAGCACAGCCAGGCAGAGCTCCCTTCACAAGGGTCAGGAGCACACCTCACACGGCAGCTTACAGTTCATTCTATTCAGAACCAAGCACATGCTCTCCTGAGTCAAAGCCAAGGGAAGGTTGGCTCCAGAAAGGCCTGACCCTATCACCCGACTCTCCCTTAAGCTCCTCCCCATTTTCACTTGTGAAAAATGTCTTTCCACCTTAAAGTTGTACGGAAGAGTCGGGTAAGGCCGCCTGGCTTGTTCTAGTAGTTGAGCCACATGAGACATGTCACAGATGTCACGGTGCCTTCCGGCCATCAGACACATAATGGATGTCCTTGGTCCATTGCTTGTCTTGGCAAACACTGATCTTGTCGTATGAAAACTACTCTCTCTGTGACCATCCCATAATCCCAGCGCCACACCCAAGCAGAAACCTTGAGGAAACAAGAGGACAGGGTTACTGACTGAACGAACATGCTGTCTTTTCTTCAG
Seq C2 exon
GTCATTGCCTCCAACTGAGCGACTTCCGGAGTCCAGTGGCCTCCCCAAGATGGCTCTTAGCTTTGCAATGAGACCTGAAGTAAGCAAGAAGGAGTTAGAGCTGAGGTTATCGCTCAGTGGCCGAGCACTTGTCTAATATGTGCACAGCCTTGGGCTCCATCCCTAATACTGCAACAGGAGCAGGGGAATGCTGCTGGTGTCTTGGTATCTGGGGCAAAGGTGGGGGGTTAATGAAAAGCAACTCAGACTACTGAATCAGATACAGAAAGGCAAATAAAAATCAATGTGTTACCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023031-Cela1:NM_033612:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=94.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACGGTCAGTATGCTGT
R:
CACCTTTGCCCCAGATACCAA
Band lengths:
343-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: