GgaINT1009014 @ galGal4
Intron Retention
Gene
ENSGALG00000004866 | CELA1
Description
chymotrypsin-like elastase family member 1 precursor [Source:RefSeq peptide;Acc:NP_001096672]
Coordinates
chrLGE22C19W28_E50C23:907223-908031:+
Coord C1 exon
chrLGE22C19W28_E50C23:907223-907372
Coord A exon
chrLGE22C19W28_E50C23:907373-907900
Coord C2 exon
chrLGE22C19W28_E50C23:907901-908031
Length
528 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGG
5' ss Score
5.87
3' ss Seq
ACTCCTTGTTCTCCCTCCAGGTG
3' ss Score
13.26
Exon sequences
Seq C1 exon
GGTGATTCGGGAGGCCCCCTGCACTGCGCTGTCAATGGGGTGTACCAAGTGCATGGCGTCACCAGCTTCGTCTCCAGCTTGGGCTGCAACGTGCGCAACAAGCCCACCGTCTTCACCCGCGTCTCTGCCTACATCTCCTGGATATCCAGC
Seq A exon
GTAAGGAAATGGGGTGGAAGGGTTTTTTTTTCCAGTGGGGTCATGCATAGGGGACTTGCATGGGGTCTCCACCCACTGGGAAGGTGTGGAGCACCCAATGGGAAATGGAGAAACCAATGGGGAACAGAGCAACCAATGGGGAATAAAGCACCCAATGGGAAATGGAGAACCTAATGGGGAATAGAGCACCCAGTGGGGTGTGGGACACCCACCAGGGAGTGGAGCACTCAAAGGGAAATGGAACAACCAATGGGGAATAGAGCACCCAATGGGGTGTGAGATACTCGACAGGGAATGGAGTACCCAATGGGAAATGGAGCACCCAGTAAGGAATAGAGCACCCAAAGGGGCGCGGAGCACCCAGGGGGGAATGGAGCACTCAGTGGGGAATAAAGCATCCAACAGGGAATGGAGCACCCAATGGGAAATGGAGCACTCAATGGGGTGTGGAGCACCCAATGGGGCCGTGTTAGCAACTCAATGGGAGCACCGTGGATTGTGGGGTTACACTCCTTGTTCTCCCTCCAG
Seq C2 exon
GTGATCTCCTAGAACAAAGCAGCAGGAGGAGAAGAGCCCCAACCCCCACCCTGAATGTGGACGTCAAGCATTTCAGCTGGGGACATTTACGTCTCAAAGCTGGCATCAATAAATTGTGTTCTTCAGTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004866:ENSGALT00000007770:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=94.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACTGCGCTGTCAAT
R:
TCTCACTGAAGAACACAATTTATTGA
Band lengths:
264-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]