RnoINT0033813 @ rn6
Intron Retention
Gene
ENSRNOG00000004725 | Cela1
Description
chymotrypsin-like elastase family, member 1 [Source:RGD Symbol;Acc:2547]
Coordinates
chr7:142305338-142306383:-
Coord C1 exon
chr7:142306234-142306383
Coord A exon
chr7:142305639-142306233
Coord C2 exon
chr7:142305338-142305638
Length
595 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTATCCTGTCTTTTCCTCAGGTC
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGTGATTCTGGGGGACCCCTCCATTGCTTGGTGAACGGCCAGTATTCTGTCCACGGAGTGACCAGCTTTGTGTCCAGTATGGGCTGTAATGTCTCCAGGAAGCCCACAGTCTTCACCCGAGTCTCTGCTTACATTTCCTGGATGAACAAT
Seq A exon
GTGAGTCCTTACACATGACGGGTTGAAGTTCTCTGTGAGCCAGGTGCTGGCCGGGTTAGATAGGGAAATCTAGGCTGGGCCATTCTTCTCATTCCCTTCCCTCCCTCCACAGAGGCTCCTCTCTCCACCAAACAGCCAGGCAGAGTTCCCTTCACAAGCCCCAGGGGTATACCTCACCACAAAGCTTGTAGTTTATCCTGTTCACAATCAAGCACAGACATGGCTGCCAAGGGAGGGTTAGTTCCAGAAAGGCCTGACCCCATCCCCATCTCCAGGCTCTCCACCTGTGAAAAATGGCCTACCTCCTTAAGCCATGTGGAAGAGACCATGCCTGGCTGGTCTCAGAGTTGAGATGTCTGGCTGGTCTCGGAGTTGAGATGTCACAGCGCCTTCCAGCCGTCGGGTACATGGAGCCTTGGTCCATGAATGCTGGCTCACAGCCATTCTAAGACCTGTCCTTGCTTGTCTTGGCGTACACCGAGGCATCTTGTCGTACAACACCTACTCTCTCTGACTGTCCCATAAACCCAGTGTGCTGCCACACCCAACAAGTGAGAGGACAGGTTACGGACTGAGTATCCTGTCTTTTCCTCAG
Seq C2 exon
GTCATTGCCTACAACTGAACGTCTTCCTGAGTCCAGTGGCCTCCCCAAGATGGTGCTTAGCTCTGCAATAAGATCTGAAGTAAGCGAGAAGGAGTTAGGGCTGGGGTTATCGCTCAGCGGCAGAACACTTTCTAATATGTGCGAAGCCCTGGGTTCCATCCCTAATACTGCAGCGGGGGCAGGGGAGTGCTGCTGGTGTCTCTCTGCTCTTTCTCCAGTATCTGGGGCAAAGGTGGTTAATGAAAAACAGCTCTGAGACTGAGCCAGATACAGAAAGGCAAATAAAACTCAATGTGTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004725:ENSRNOT00000006351:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=94.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCCATTGCTTGGTGAAC
R:
AAGAGCAGAGAGACACCAGCA
Band lengths:
346-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]