HsaINT0033070 @ hg19
Intron Retention
Gene
ENSG00000139610 | CELA1
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:3308]
Coordinates
chr12:51722227-51723617:-
Coord C1 exon
chr12:51723468-51723617
Coord A exon
chr12:51722379-51723467
Coord C2 exon
chr12:51722227-51722378
Length
1089 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CATAACTGTCTTTCCTTCAGGTC
3' ss Score
11.88
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGCCCCCTCCATTGCTTGGTGAATGGCAAGTATTCTGTCCATGGAGTGACCAGCTTTGTGTCCAGCCGGGGCTGTAATGTCTCCAGGAAGCCTACAGTCTTCACCCAGGTCTCTGCTTACATCTCCTGGATAAATAAT
Seq A exon
GTGAGTCCTCTCAAATGATGGGTTGAAATGGGGTCACCTGGAGACCTACGCACTGGCTGGGTTGGGGAACAAACGTTGGATGGACTGGGCAAGCCGTCATCTTCCTTACCACATTCATGTGTTTACTCCCTTCCCTTCCTTCCACGGTGTACTTTCCTTCAATAAGGCTGCCATCCTGAATTCCCTCCCCTCCACATACCCACAGAGCAGACTTCACTGTATTGTTTATTGCTTAGGGTAAGACAGTGGCAACATCAAATCTGAATCAGGGACATATCAGTGCCTTCCTAAGTCAAAGCCCAGGGAAAAACAGGTTCAGAAAGGCCTGCGTACTCCTAGGCAAGGGAAGGAGGCACCGACTTCCTCTCCCACAACGTCTTTCTAAGGACATTATGATAATTTGCTCTAACTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTGTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCTCGACTCACTGCAGCCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCTTCAGCCTCCCAAGTAGTTGGGATTATAGGCATGCACCACCAAACCTGGTAAATTTTTTTTGTATTTTTAGTAGAGATCGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCACCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCGCCCGGCCTGCTCTAATTTTTGACAGGTTTTACCACCTTAAATAATGCTTGAGAGTTAGGTGAGGCTCTGCCTACACTGACCTGGTGGAAAGGCCACACAACACATTTCACTGTGCCCTCCACCCTTCAAACACATTCTGGAGCCTTGTGTATTAATCTTGGCTCACGGCCATTTCAAGGTCTGTCTTTGCCACTGTATTCTGGGTATGTACCTATAACACTGAGCTGTCCTATCACAGTTGAGGCTGACTTCCTGCCTCCCTGTCCCCACACCCTGTCAACTTCCCATAAACCCAGTACAAAACCATACTTAACTGGGAGCCCTGAGGAAACAAGAAAGGAGGTAGGCAGGAGTTACTGACTGTGGACATAACTGTCTTTCCTTCAG
Seq C2 exon
GTCATCGCCTCCAACTGAACATTTTCCTGAGTCCAACGACCTTCCCAAAATGGTTCTTAGATCTGCAGTAGGACTTGCGATCAAAAAGTAAAACACATTCTGAAAGACTATTGAGCCATTGATAGAAAAGCAAATAAAACTAGATATACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139610-CELA1:NM_001971:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=94.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCCATTGCTTGGTGAAT
R:
ATTTGCTTTTCTATCAATGGCTCA
Band lengths:
270-1359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)