BtaINT0036776 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62673959-62676641:+
Coord C1 exon
chr16:62673959-62674109
Coord A exon
chr16:62674110-62676471
Coord C2 exon
chr16:62676472-62676641
Length
2362 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TGTTACTTATTCTTTGACAGTAT
3' ss Score
6.83
Exon sequences
Seq C1 exon
AATTTGAAGACAGGTTGGAAGGAGGAACATCAGCATCACGGCCTTTGAATGCCATCACAACCCCTTTAAGCAGCATTTCCTATGAAGATGATTTTGTCTCCTCTGCAGGGAGTGGGACTTTGACAGAAAGAAAGTCAGCTCTTGAACCCAA
Seq A exon
GTAAGACTGTGTTAACAGTATGGAATAAAATCTGAAGAGTGAGACAAATGTACAAATGAGAACTGAGGTCTGGATATAAGTCAGATTTTGCTTGTTTGAAGATCATGTAGAAGCTGCATAGCCTAGTAGTTATTAAGAGCATGGGCTCTGGATCCAGACCACGTGGGTTTAAATACTGACTCTACTAGTTTGTCTTTGGGCATGTTGTTTATCTCCCTGTGCCTCAGTTTTCTTCTCTGTTTAAGTGTTATGAATGTTCAGTGAAATACAAAGTACTTGGAATGAGTCTGGCACATAATAAACAAAATATAGATTGTTAAATCAATCTGTGAATCCCCGGTCGAGGTTAGTATTGGGAAAATTATCCCATGGTGTGTTAATGTGAGATGATTAAGAAATGGTTTTCTATAACGGAGTTGAAGATGACTAGCTAAACACTTGGCTCCATGATCCTATTCAGTTCAGTCACTCAGTAATGTCTGACTCTTTGCGACCCCATGGACTGCAGCATGCCAGGCTTCCCTGTCCATCATCAACTCCCAGAGTTAACTCAAATTCATGTCCATTGAGTCAGCGATGCCATCCAACCCACCTCATCCTCTGTCATTTCCTTCTCCTCCCACCTTCAATCTTTCCTAGCATCAGGGTCTTTTCAGATGAGTCATTTCTTCACATCATGTGGCCAAAGGATTGGAGTTTCAGCTTCAACTTCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTTCATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACTACATGATCCTAAGTAATCAGTAAATTTTTTTATAGTTGGAATAGCATCAAAAACTTTGCAAATCTTTGAATAGTAGCGATATTATAATGTTAATATTTATTGAGCAGTTAATGTACAAGGGACTTCCCTGGTGGCTCAGTCAGTAAAGAATCTGCCTGTAATGCGGGAGACCAGGGTTTGACCCCTGGATGGGGAAGATCCCCTGGAGAAGGAAATGACAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGTCAGAGGAGCCTGGTGGGCTACAGTCCATTGGGTCATAAAGAGTTGGACACAACTGAACAACTGACACTTTCACTTTAACGTGTTAAGTTACTAAGAGGACTGATTGGGCTTTCCCTGTATGAACTCATTCTTCTAGTAGCCTGATATGATAAATATTTTTGTTACTATTCATACTTGAGAGAGGAAACTGAAGTCCTAAGGTTGTTACTTGTACAGTGTCATATAGTACGTGAATCATATTTCGCCAGAGAATTTCCTCCCTAAATTTTGTTACCATATAAAATAATCTGTAGTCACTCACATGCAGTATAATTTTCTTCACACATTACAAATTGTAATGCACATAAAATTATTGGATGATCTTTTAAAAATTAGTTATATCCTCATATATATGAAATCTAGAAAGATAGTAATGATGATCCTACATGCAGGGCAGCAAAGGACACACAGACATAAAGAACAGACTTTTGGACAAAGTGGGAGAAGGGGAGAGTGGGATGATTTGAGAGAATAGCATTGAAACATATACCTACCGTATGTAAAATAAAAAGCCCGTGGGAGTTCAGTGTATGATGCAGAGAACCCAAAGCCGGTGCTCGTGACAGCCTAGAGGGGTGGGATGGGGAGGAAAGTAGAAGGAGGGATTCAAGAGGGAGGGAACACGTGTGTCTCTAATGCCTGTTCATGTTGATATATAGCAAAAACCATCACATTATTATAAAGTAATTATCCTGTAAAAAATTTAATCAAAAAATTAGTTATATATAGCTGGATTAATGAAAATAAGTATTATTAAGATTATAGCAGAAGTGTAGTTTTAAATTTTGAACTTCAAAGAAAAGGTTTATTTTTTAATCAAGATGTGTAAGGATTTAATTGTGGTAACATTTAGTATCACCAATCAATATGATTTATTATATTTTATTTCTGAGTTGGAGTAGAACATATTATTCCCTATAAGATTGTTAGAAGGAAAATAATAAATTATACATTTGAATAGAAATTGAGCTCACATTTTTCAGTATCCAGCATTATATTTTTTTCTTTTATGTGTCCGAATTACCCATTTTTATTGGTTTCACTTCAGTAAAAAACTGCCTAAGACTTTTCTCAGTAATAAATTGAGCCATAGGGAATAATGCAGGCTTCTGGTACTGACAAAACAAGACAAGTGGAAAGCATCTTTGATTATAGTTATATTCTCTTTGTGACTAAATAGATTTTAAAATATCTATAGTTTTAGCTGTGAGTTGAAACTTTTTGTTTCTTTAACCACTGTTACTTATTCTTTGACAG
Seq C2 exon
TATTGGGGGTCACAGTTTAGGCATTCAGGAGGATCATTCTAGCAGAAAGTCTGCCTATGATCTCTCCTCTGTGGATGTTACTTCCCAGCACTCATCAGGGGCCCAGTCTGCTGCATCGTCTCCTTCTTCTTCTTCTAAAGGGAAGAAAGGAAAAAAAGAAAAGATAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=NA C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development