GgaINT0038283 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6336945-6337812:-
Coord C1 exon
chr8:6337659-6337812
Coord A exon
chr8:6337100-6337658
Coord C2 exon
chr8:6336945-6337099
Length
559 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTTTTTAGTGTTGCAAGCAGCAG
3' ss Score
-0.18
Exon sequences
Seq C1 exon
TGTTTGATGGAAGATCAAATGGAGGATCTTCCCTTCTGCGCCCTTTGCTCCCTACCCTGAGCCCTCCAGAGAGCGTTGTTTCTTATGAAGATGACTTTGCCTCCTCACCAGGGAGCAGCACTTTAACAGACAAAAAGCTTGCACGTGACCTCAG
Seq A exon
GTAACTGTGTTTGTCTTCCTAGAAAAATCAAAATGCACATTTGAGACAATGTGGCTGATGCAAATTTTGTTTTACAATACACTGCACATCTTTCCTGGTATGCTGTAGTGTAATGCTACTGAAAGCGGTCAGATATTTCTTTATGATCTTGCAGTTAATGTGGTAAGCAACCTGACTTTTAGATGCAAAGGTTAGAGTGGAATATTCCCAATTTTTGCCTGGTTTCTGTTCTGCCTTGGTCTGGCAGGTAGCTTACCCTTCGTAGCTGAGTGAAAATTAGCTCTTGTGTGGCTGTTAGAATGCTTAATTGGTTAGTGCTTGTAAAAGTTATGAAGGAAATAAGATTTGAAAGTGTTAAAATGCTTCCACTACTTCAAATTAGGACTGTGCAATGTCTTAGCTGTTGAAGTTTTTAATTTCAGAATTGGCGTTTTTCAAGATGAGCTGTTTGGTGTGGTTTTAGTCCTTTCTTGCAAACTTCTTGTACGCAATGTAACAAAGGAGTTGAAAGTCCCCAGTTAATCACTGTCAGTCTGTTTCTTTTTAGTGTTGCAAGCAG
Seq C2 exon
CAGTAATTCAAGCATTCAGGAAGAACTTCCTAGCAGGAAGTCTCCCCGTGAGTCTCGATCTGTTGAACTTGCATCTCAGCATTCATCTGGACCCAGATCTGCAGCATCTTCTCACTCATCTACTTCATCTAAAAAGAGAGGAGGGAAAAAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGAAGATCAAATGGAGGA
R:
TCCCTCCTCTCTTTTTAGATGAAGT
Band lengths:
297-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]