Special

RnoINT0034604 @ rn6

Intron Retention

Gene
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73568987-73571336:-
Coord C1 exon
chr13:73571195-73571336
Coord A exon
chr13:73569157-73571194
Coord C2 exon
chr13:73568987-73569156
Length
2038 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TATTACTTTCTCCTTGACAGAAT
3' ss Score
8.6
Exon sequences
Seq C1 exon
GGTTTGAAGACAGGGGGACATCGGCATCACGGCCTTTGAATGCCACCACAACTCCACTCAGCAGCGTTTCATATGAAGATGACTTTGTCTCCTCTCCAGGAAGTGGGACACTGACAGAAAAGAAGTCAGCTCTTGAATCTCA
Seq A exon
GTAAGAATGTGGTAGCCAATAGGCAGACAAGCGAGAGCTCTGGTCAGAGTATAAGCCACCTCTTAGTTGTTGATCTGTGGAAAGGCTGTGTAACGGGTGGATCATGGGCTCCACGCAGGTCCAGGCTCTCTGAGTCGACTTGAGAGCGAAGTGCTCGTTTGGTGAAAATAGTTGTACCTGCTCGCTTCACAGAGTTGTTACAAATGTTCAGTGAAATATACATTTTTCTCTTTTTTTTTTCTTTTAAATTTGAGATATGGTCTCATGTAGCCAAGGATGACCTTAAATTCTTGATCCTCGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGGAAAAAAAAAAAGATTCTTGATCCTCCTGCCTCCAATTCTCAAGTGTTCTGGGATTACCTTCATGTGCTGCACACCTGGTGAGTGGATCATAGAATACTGAAAACAGGACCTGGTACATAAGAAAGAGAATACAGGAACTGACGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTATTCAACATTAAATAAATAAATCTTTAAAAAAGTTAAAAAAGAAAGAAAGAAAAAAGAAAGAGACTACAGGTTATAAGTCAGTCTGAGTCCGCACAGAGGATAGCATTGGGAAATGGTCTTCAACCTATTAATACTAATACAAAACTGTTTTCTGTGGTAGATTGAGGAAAATCAGGTTGTCATTTAACTTTATGGTCCTAATAATACTTTTTTTAATCAAGAAAATATCAGAAGGTTTGGTATACACTAAACATCTAAGCTTTGAAAAAATGGATTTTAACTACTGGTGATTATTGGGCCTTAATATGCAAGAACTGAAAGGATGAACTTCACATGTATACCTCACTTCTGTTTGTAATAGCCCAGTTTGAGAAGGATTATTCTAGAATGCATTTTTAGATAAGAAATTGAAGAAGTTAAATTATACAAAATCACAAAATAAATTTGACTTTTCTAGAGTTTCTTCCCTAAATTTTATTACCATGTAAATTTATCATTCTCCATAGTCAGTATCTTTTTTACACCCCTATTAAACTATTAGATCTTACAGAAATTAGTTCTGCTAATTTTCTATTAGCCAGAATAGTATGAATATTCATAAAAGTATAGTAAGAGAATTGTAGTTTAAAATTTGAGTCTAAAGAAAAGATTAGACTTTTAAATTAAGGTTTTTAAGGATTTAATTAATATCATCAACCAATATGATTTAATGCGTTTTACTATTAAGTGAAAGTAGAATATATTAAAATTATTGGTCTGTATAAGATTATCAGAGGAAAAATAATTATGCTGTATAAAAGTATAAGTTTAATTATGAGTAGAGATCAAGGCTACAGTCTCCCACTGTCAGCCCACAGTCTCCCACCACCAGCATTGTATTTTTTCTCATACATGTCTGAAACATTTGTTTTTTCCATTTTTTTAAAGATAGGGTTCATGTAGCAAAGGTTAGTCTTGAGCTTCTAATTCTCCTGTTCTCACCGCCTCAGTTTATGTTGTCCTGTAGACCAAACCCAGGACTCCATGCATGCCAGGCAGACACGGCCAGCTGAGCTCCATATCTAGCCTGAAACATATTTTGGTTTCACTTCAATAAACAACTCATCTGAGGTTCTTTTACTGAGCAGTAAACTGAGCCGTAGAGAACCGTAAAATTGATATATACACAGGCCGTTGGATATGTCTGCCACCATTTTGTTTGAGTACCCTTTGTTGTGAGTTTGTTTTACTTTTGGTTTTTGTTTGTTTTTATTCAAGAGTAGGCTTTGCTTTGGCATCTGATCTAGGTACTCAGAGCTCTTTTGAAACAGAATTCATGATTTTTTTTTTCACTTTTGGGTTTTTCGTTTTGTTTTGTTTTTTTATTAACTCATATTACTTTCTCCTTGACAG
Seq C2 exon
AATTGATGGTAGCAACTTAGGCATTCAGGAGGACCATTCTAGCAGAAAGTTTGCCTATGACCTTTCCTCTCTGGATGTTACCTCACAGCATTCCTCAGGAGCTCACTCTGCCGTGTCCACTCGCTCATCTGCTTCGAAAGGAAAGAAGGGGAAAAAGGAAAAGATGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882:ENSRNOT00000005195:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.708 A=NA C2=0.759
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]