HsaINT0033788 @ hg19
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179991833-179993717:+
Coord C1 exon
chr1:179991833-179991983
Coord A exon
chr1:179991984-179993553
Coord C2 exon
chr1:179993554-179993717
Length
1570 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TATTATTTATTCTTTGACAGTAG
3' ss Score
5.47
Exon sequences
Seq C1 exon
GGTTTGAAGACAAGTTGGACAGAGGAACATCAACATCACGGCCTTTGAATGCCACCGCAACTCCTCTAAGTGGTGTTTCATATGAAGATGATTTTGTCTCCTCTCCAGGGACTGGGACTTCGACAGAAAAAAAATCAACTCTTGAACCTCA
Seq A exon
GTAAGATATATTGGCAATATGGAATAAACTCTGAAGAGTGAGAAAAATGTACAAATGAGAACTCTGGTCTGAATATTAGCCAAGTTTTGCTCATTTAAAAATACATATAGAGGCTGCACATCATAGTGGAGATCCAGAGCATGGGCTCTGGATCCAGACTGCCTTTGTTTAAATCCAGGCTCTCCTGGTTATTGGTTGTTTGTATTTATACATATTACTTAGCCTTCCTATGCTTCTGCTTCCTTCTCTGTAAAATGGGGACATTAATAGTACCTGCCTGCCTCATAGAGTTGTTATGAGTATTAAATGAAATATAGGGAGGCTGAGGCACGAAAATCGCTTGAACCTGGGAGGTGGAAGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTGACAAAGCTGACCCTATCTCAAAAAAAGAAAGAAAAAAAAATCACTTACTTAGAACAGGGCCTGGCACATAGTAAGCAGAGTATAGGTTATGAAATCAGTCCATGAATTCCTAGTACAGTATTGGAGTATTGGGAAATTATTCCATGCTATACTAACATAAAAAGCTTAAGAAATGGTTTTCTGTGATAGAATTGAGGAAGATCAGATAGATACATGACTCCATGGTTCCAAGTAATAAGTAATTTTCTTTATAATCAAGAAAACATTGAAAAATTTGCAAAGCTTTGAAAAACAATAATTATAATGATTATAACATCTGATAATTATTGGGCACTTAGTGTGCAAGACACTGAAAGGACTGAGGGACTTTACCTGTATTAACTCATTTTTATGATAGCCTGATGTGGAAAGTATTACTGTTATCATTTCTGTTTTAGACAGCAAACTGAAGCAGAGGTTAAATTACTTGTACATAGTCACATAGTAAGTGAATCAGACTTCGTTGGAGAGAATTTTCTCCCTATATTTAGCTGCCATAAAAATTTATCTGTAATTATTCATATTTAATATCATCTTTTTCAAATATTACAAATTGTAATCCATGTAAAATTATTAGGTAATCTTATACAAATTAGTTAAATCTAAATAGATTAATAGGAATAAGTATAAAAATTATATGAGAAAAAGCATAGTTTTAAGTTTTGAGCTCTAAGGAAAATATGAAATTTTTAAATAAAAACCTTCAAAGATTTATGGTGACATTTAATATCACCAATCAATATGATTTGATGCATTTTATTTCCAGGTAGAGGTAGAACATATTAAGTTATTGTTCTCCATAAGAATATAAGAGGAGAAATAGTTATAATATATAAATTATAAATTTGAATAGAAATTGAGGCCATATTTTCCAGTATTCAACATTATACATTTTTCTCTAAATATTAGTTTTTATTGGTTTCACTTACCTTTGATTTTTCTTAGTAATAAATTGAACCATAGGGAACAATCCAGGCTTATGGTGGTTAAAAAAAAATAATAAAGTGTTAAGCCATCTTTGATTGTAGTTATAGTCTCCTAGTGATTACATAGATTTTTAAATATCTTTAATTTAGCTGTGTTGTAAGACTTTTCTTTCTGGAACTACTATTATTTATTCTTTGACAG
Seq C2 exon
TAGCACTTTAAGCCCTCAGGAGGACCATTCTAACAGAAAGTCTGCCTATGATCCTTCCTCTGTGGATGTTACCTCCCAGCATTCATCAGGAGCCCAGTCTGCTGCATCGTCTCGTTCATCTACTTCTTCTAAAGGAAAGAAAGGAAAAAAGGAAAAGACAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-CEP350:NM_014810:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGAAGACAAGTTGGACAGA
R:
TCCTTTAGAAGAAGTAGATGAACGA
Band lengths:
287-1857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)