BtaINT0036779 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62688976-62689797:+
Coord C1 exon
chr16:62688976-62689190
Coord A exon
chr16:62689191-62689633
Coord C2 exon
chr16:62689634-62689797
Length
443 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GACAATTATATGTCTTCCAGGTT
3' ss Score
8.11
Exon sequences
Seq C1 exon
TGTCTCATCAGATAAGGGAAGATCTCAGAAAACTCCAACTTCTCCCATATCTCCAAGTTCTCAGAAACTGTTGCAGTTTGACCTTCCAGGAACTTCATTAGAAAGATCTAAATCCTCAATAGTAGTGACTCCAACAGGGTTTAAGCCTAATGCAACTTTTGCTGACATGAACCTGGCTGCCAGCAGAACGACAACAGAGATGGCGTCAACACCAG
Seq A exon
GCAAGTAGATCCATGCAGCTGTAATTTTAAAAATAGGATATGAATTTATTTCTAAAAATTTATTTCAGTTAAACCATAGAGGAATGTTACTTCAAGTGAATGCAATTACTATTTGAAGTATTAAACAAAAATTGTGCCAGAAAATAAATATTGAAAAGCATGAGAGATTCAGTAGTGGTGACTTTTCCCATCTAGCCAGCATCAGTCAAAAGACACTTGAAAAATGTGTCTTGTGTATGTATTATGTACACTGGCATGGTTTATACGTACGTTCACATGCATACACACTCAAAAAAAGTAGCTAGTAGAATACTATGTACTAAAACGTCACTGTCTTTCCTACAAAGGATAGCAGACTTGTTTTTGGACCTTAAGAAATGAATTTTAGAAATCAGATGTAATTTCACATGAACTTTTATATATGACAATTATATGTCTTCCAG
Seq C2 exon
GTTCTAAGCGCTTTTCTCCTGCTGGCCTCCAGCATCGGATGGCAGCAGAACTCAGTTACTTGAGTGCCATTGAGGAGTCCGTGCGTCAACTATCAGATGTAGAAAGAGTTAGAGGAGTTTCACTTGCTCAACAGGAGAGCGTGTCTCTGGCTCAGATCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=NA C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAACTTCTCCCATATCTCCA
R:
GATCTGAGCCAGAGACACGCT
Band lengths:
342-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development