GgaINT0038286 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6334718-6335215:-
Coord C1 exon
chr8:6334995-6335215
Coord A exon
chr8:6334882-6334994
Coord C2 exon
chr8:6334718-6334881
Length
113 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AGTTAAATCCTGTCCTTCAGGAT
3' ss Score
6.97
Exon sequences
Seq C1 exon
TTTCTCAGACAAGGGAAGATCTCAGAAGACGCCGACTTCTTCCCCATCTCCAGGTTCCCAAAAAATTATGCAGTTTGATTCTGTAGTCAATACAGCAGAGAGAGCGAAGTCACCTTCTGGCTTTTCTGGAAGCGCAGCATCAGGGCAGAAGCCCAACCTAGCTTTCTCTGACTTGAGTCTGGGAACTAGTAGGCCTGCAGCAGGAGTAGCCTCAGCGAGTG
Seq A exon
GTGAGTTCTCTTAAAGATGTACTAACTCCAGAGCTGTTCTATTTTTTGTCATTATTTTATGTTGTGGGGCACTGAAGTACAACAGAGTCTGACAGTTAAATCCTGTCCTTCAG
Seq C2 exon
GATGTATGCGCTTCTCCCCTGCTGGTCTTCAGCATCGTTTGTCAGCAGAATTGAACTACCTTACTGCCATTGAAGAGTCTGTACGACAGCTTTCAGATGTGGAACGAGTACGAGGCATATCACTGGCCCAGCAGGAGAGCGTTTCTTTGGCTCAGATTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGAGAGAGCGAAGTCA
R:
GCCTCGTACTCGTTCCACATC
Band lengths:
246-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]