RnoINT0034607 @ rn6
Intron Retention
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73561498-73562462:-
Coord C1 exon
chr13:73562260-73562462
Coord A exon
chr13:73561662-73562259
Coord C2 exon
chr13:73561498-73561661
Length
598 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCGATACCCCTGTCCCCCAGGTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
TGGCTCATCAGACAAGGGAAGATCTCAGAAGACTCCAACTTCGCCCCTATCTCCGAGTTCACAGAAATTGTTACAGTTTGACCTTCCAGGGACTTCTTTAGAAAGGTCTAAGTCCTCAGTCATAGTACCTCCAACTACAGCTGGATTTAAGCCCACTGCAGCTTTCACTGATGTGAATAAAACAGAGATGACTTCAACACCAG
Seq A exon
GTAAGAGACTCATACAGGTAAAAGTTTAAAAGTAAAGGGTCAGGTGTAGCTCAGCTCGTGGAGTGCTGGCCTAACCTGGGTTTACCGGGCACCATGTAAGTCACATGCCAGATGCAAACACCTCTCCTAGGCCACCGAGTGAGTTAGAAGGTCAGCCTGGGGTACATGAAACCATAGTCAAAAGAGAGTTAGAAACTAACAAGAAAAACAGCAAACCAAGTGATGGGGAAATGTTACTTCAAGTTTATATGAAGTATTAAACAAAAGTTGTGTAGAAATTAAATGTTCAAAAGCATGAGTTCAACAGTCTTCATTTTTTCCCATGTTGCCAGCATTAGTCAAAATTCATCGCCCAAATAATATTAGATTCTATTTGTAGGCATGTAATACACACACACACACACACACACACACACACACACACACACACACACACACCCATAAGAGAAGAAAAGAAGTAACTGTTAAAATACAATATATCGATAAGTTACTGTCTTTAGTACAAAGAAAAGGTAGATTTGTTACGTGCTGATAACATGAGAGCTGGTACTGTTGTTTTGTGTGAACCTTTTGATTTAGCGATACCCCTGTCCCCCAG
Seq C2 exon
GTCCCAAGCGTTTCTCTCCTGCTGGCCTTCAGCATCGCATGGCTGCAGAGCTCAGTTACCTCAGTGCCATCGAGGAGTCAGTGCGTCAGCTGTCCGATGTGGAAAGAGTTAGAGGCATTTCACTCGCCCAGCAGGAGAGCGTATCTCTGGCTCAGATCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882:ENSRNOT00000005195:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=NA C2=0.202
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCATCAGACAAGGGAAGA
R:
GAGATACGCTCTCCTGCTGGG
Band lengths:
350-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]