HsaINT0033791 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180033862-180037089:+
Coord C1 exon
chr1:180033862-180034082
Coord A exon
chr1:180034083-180036925
Coord C2 exon
chr1:180036926-180037089
Length
2843 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACCATTGTCATGCCTTCCAGGTT
3' ss Score
9.61
Exon sequences
Seq C1 exon
TGTCTCATCAGATAAGGGAAGATCTCAGAAAACTCCAACTTCTCCCCTGTCACCAAGTTCCCAGAAATCATTGCAGTTTGACGTTGCAGGAACTTCTTCAGAAAGATCTAAGTCGTCAGTAATGCCTCCAACTATAACAGGATTTAAGCCTAATGCACCTCTCACTGATCTGAACCCGGCAGCCAGCAGAACAACGACAGAGAACATGGCTCCAATACCAG
Seq A exon
GTAAGTAGATTCATGCAATTGTAATTTTTAGAATACGATATGAAATTTTTTTCTCTCAACATTCCTTTTCTTTGTTTGAGTTGAGTCATAGAGAAATATTATTTCAAGTGAATATGATTACTTTTCAAGTATTAAAAACTGCAAGAAATTAAATATTGAAAAGCACGAGAGGTTCAGTAATGTTGACTTTTTTCCCATCTTGTCAGCCAGCATTAGTCAAAACATATCTGAAAAATATGTCCCATATGTGCACTCCTGTTTATATGTATATGCATGTATACACACATGTACGCATGCACACACATAGAAGTAAAGTACATTGTATAGGCATACCTTGTTTTATTGTGCTTGGCTTTATTGCATTTCACAGATACTGCGGGGTTTTTTTGTCTTTTTTTTTTTTTCTTTACAAATTAAAGGCTCATGGCATTGAACAAATTCATCAGTGCCATTTTTCCAGCAGCATGTGCTCACTTCATGTCCCTGTGTCCACAATTTTGATAAATCTCTCAATATTTCAGGCTTTCCATTATTACTATATCTGTTACGGTGATCTGTGATTAGCGATCTTTGATGTTCCTGTTGTATTACTAATTGTTTTGGGTGCCACCAACCATGTCCGTTTAAGAGGGCAGACTTAGTGGATCAATGTTGTGTGTGTTCTGACTGCTCCACCAACTCACCCCGTTCCCCTCTTCAACCCTCCCTCTGGCCTCCTTATCCCTGAGACACAATAATATTAAAATTAGGCCAATTACTAACCCTACAATGGTCTCTAAGTATTCACGTGAGAGGAAGAGTCACATCTCTCACTTTAAATCAGAAGCTACAGATGATTAAGCTTAGTGACGAAGGGATGTCAAAAGCCAAGATATGCCAAAAGCTAGGCCTCTTGTGCCAGTTAGCCAAGTTGTGAATGCAAAGGAAAAGTTTTTGAAGGAAATGAAAGGTATCACATGAATGACAGATAAGAAGACAAAATAGCCTTATTGCTGATATGGAGAAAGTTTTAGGGACCAAGATAGAAGATCAAGCCAGTGGCATCTTTAAGCCAAAGCTTAATCTAGAGCAAGACCCTAATACTCTTCAATTTTGTGAAGCCCTAGAGAGGTGAGGAAACTGCAAAAGAAAAGTTGGAAGCTAGCAGAGGTTAAAGAAAGAAGCCATCTCTATAAAATAAAAGTGCAAGGTGAAGCAACAAGTGCTAATGTAGAAGTTGCAGCAAGTTATCCAGAAGATAGTTGATGAAAGTGGCTACACTAAACAGATTTCCAACGTAGATGAAATAACCTTATGTTGGAAGAAAATGTCATCTAGGACTTTGATAACTAGAGAGAAGTTAGTGCCTGGCTTCAAAGCTTCAAAGGATGAGCTGACTGTCTATTTAGGGGTTAATACAGCTGATGACTTAAAGTTGAAGCTAATGCTCATTTACCATTCTGAAAATCCTAGAGTCCTAAAGAATTAAGCTAAATCTACTCTGCCTGTGCTGTATTAATGGAACAAGAAAGCCTGAATGACAGCACATCTGTTTACAGCCCTCAGGTTTACTGAGTATTCTAAGCCCACTGTTGAGACCTACTGCCCAGAAAAATAAAAGATTTTTTTCAAAGTGTTTTTTTCAGAATTTGAAAAAATATTTATTCCTGCTTATTGACAATGCACCTGGTCATCCAAGAGCTCTGATGGTCATAAAAAAGGAGATTAATGTTTTTATGTCCCCTAACACAAAGTCTATTCTGTACCCATGGATCAAGTAGTAATTTCAACTTTTAAGTCTTATTATTTAAGAAATGCATTGTGTAAGGCTATAGCTGCCATAGATAGTGATTCCTCTGCTGATTTGGGCAAAGTAAATTGATCACCTTCTGGAAAGGATTCACTGTTCTAGATGCCATTAAGAACAGTTGTGATTCGTGGAAGGAGATCAAACTATGAGCATTAACAGGAGCTTGGAAGAAGTTGATTCCAGCCCTCGTGGATGACTTTGAGGGGTTCAGAACTTCAGTGGAGGAAATAACTGCAGATACGGTGGAAATAGCAAGAGAACTAGAATTATAATTGGATCCTGAAGATGTTACTGAATTGCTGCAGTCTCATGACAAAAGTTGAATGAATGAGTAGTTGCTTCTTATGCATGAGCAAAGAAAGTGGTTTCTTGAGATGGAATCTACTCCTAGTGAAATGACAGTAATTATGTAAATATTACATAAACTTTAATTGATAAAGCAGTGGCAGGGTTTGAGAGGATTATCTCCAGTTTTGAAAGAGGTTCTACAGAAAGTGGGTCAAATGCTACCAAACAGCATTACATGCTCCAGAGAAATCTTTTGTGAAAGCAAGAGTCAATCGATGCAGTAAACTTCATTATTGTCTTATTTTAAGAAGTTGCCACAGTCACTCCAACCTTTAGCAACCACCATGATCAGTCAGTAGCTATCAACATTGAGGTACGACCTTCCACCAGCAAAAAGATTAGGACTTGCTGAAGGCTAAGATGATCATTAGCATTTTTTTAGCAATACAGTATTTTTAAATTAAAGTATGTACTTTTTTTAGACATAATGCTATTGCACACTTACTAGACTACAGTATAGTGCAAATATAACTCTTATATGCACTGGTAAACCAAAAAATTTGTGTGACTTGCTTTATTCTGTTATTTACTTTATTCCTTTGGTCTGGAACTGAACCTGCAGTATCTCCAAGGTATTCTGTACTGAGTCCCAGTTTTTTCTACAAAGGAAAGCAAAGTTGATTTTGGCTCTTAAAATGACAGATTTTAGAAATCTGAGTGTAATTTCATGTTAACTTTTCCATTTGACCATTGTCATGCCTTCCAG
Seq C2 exon
GTTCTAAGCGCTTTTCTCCTGCTGGCCTCCATCATCGTATGGCAGCAGAACTCAGTTATCTGAACGCCATTGAGGAGTCGGTGCGCCAACTGTCAGATGTAGAAAGAGTTAGAGGCATTTCACTTGCTCAGCAGGAGAGTGTGTCTCTAGCTCAGATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development