BtaINT0036785 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62700548-62704119:+
Coord C1 exon
chr16:62700548-62700670
Coord A exon
chr16:62700671-62703934
Coord C2 exon
chr16:62703935-62704119
Length
3264 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TTTTTCTCATTTGTTTCCATAAT
3' ss Score
1.4
Exon sequences
Seq C1 exon
GAAAAGTCAATCTGGTTCACTTTCTCAGAGTAAAGAAGGAACCCTTGACTCTAAGCATCAGAAATTTTCCCCTTCGTATGATAGTTATTCTGAGTCTTCAAGATACAAGAATCGTGATAGAAG
Seq A exon
GTGAAGACAGTTTGATTTAGTAAAGTTTGACAAATGGCTTAGACATTGCTTTTTTAAAATTCTTTTGTCTTATTTCTTTAAATGAAATAGTGTTTTCCCTTCTGTTCTGGCTTCCCTGATTTTTAGCCCGTTTATGAAATAGTTGTTTCATGTAATAATATAGCTACCATTCCTTGACAATCTACTGTACAAGTACTGTAAGAATTGTTTTTACTGCATTTAATCTTCACAGCAACCTTCCAAGACAGATGTTATTGTCATTTTTTAGGTAAGGGAACTAAGGATCATGGAGATGTTAAGAAACTTATCTATAATCACATAGCTAGTAGCACATCAAAAAATTGAACCATGATGTATCTGGCTTGAGAGTACACTGCTTTGCTTATATCCATATTTTTTGACATTACTGTATGTACTAATTTTTATCATTATGAAAGAAGATTGAATACTTTGTCATTGATACTTGATACTTGGTAACATCTGTAATTTTCAGTGATGGATCTGTCCTTCGATTAAAAAGTTTTAGAGGCTACTTTCCATCATTCCTAGAGATAGGATACCTATGTTATCAAAGTATACTAAAACCTCAATTTAAAATATTAAATCATGAGACTGAAAAATATGAAAATTAATGGGGGTTAAGTACCAACAGTTATTAAGTACTTTCATACTTAATAACTGTTGTGTGGAACTGTTGTGTGGAAAAAGTGTCTGGAACTATGTGACTTTCATTTAACCTTCACTGACACTTAATTTAGGCCATCACCTGAGTTCCTGCAGTGGTCTCCCAATAGGTTTTCCTGTCCTTTAACCTTTCCCTTCCTCTATTCATTAACCACATGGCAACCAGAGTGATTGTTTGAAAATTTGCAGCCGATTGGTTATTTACCTCTTTGAAACATCAGTGTTTCCTCAGAGCCGCTTAGTACAGCACGGAAGTCCCTTTGTGATTAAGCCTTTAGTCCATCTCCAGCTCTGTCACTTGGCATTTCCCCTCTTACCATATTTTACTAGTTCTAACTACTTCATTTCTCTAAGAGCCTTGCTCTCTTTGTCTCCTGTGCCATTACATGCTGTCCCTTCTTTCTAGACCCTCCCTACTCCATTTTATTTACTATAGTTTTACTTCCCCTTTAAGAATCAGTATTAGCCCCTCATCTGCTTTAGACATCCCTTCTGTGTTTACCCACAGCAATCCAAGTGTAACTATTACAGCCATTAGCAGCTTCTATATTCTTACTCCTTTACTTATTACTTGTAGACTAAACTTGGAGCTCTTTGAGGACTTCATTTTCATCACCCCCACAATGAAACCCTATACCCATTAGCAGTCAGTTTGTATGTCCCTTCTTTCCCAGCTTCTGGCAACAACTAATCTACTCTTTGTTTTCTATGGATTTTTGTCTATTTTGGATATTTCATATGAATAGCACCATTCAATAGGTGGCTCTTTGGAACTGGCTTCTTTGACTTAGCATAATGTTTTCAGAATTCATCTATCATGTATCAGTACTTTTCCTTTCTATAGCCAGATAATCTATTGCATGGATGTCCCACATTTATCCATCAGTTGATGGACTTTAGAATTTTTTTCATTTTTTTTTTTGCTCTTGTGAATGGTGCCACTGTGTACTGATTCATTCATGTACAAATTCTTGTGTGGATATATTTCATTTCTCTTGGGTATATACTTAGGAAAGGAATTGTAACTCTGTTTAACATCTTGATGATATGCCAAACTGTTTTCCAAAATAGCTGCTCTGTTTTACATTTTCACGAGGAATATAAAGATTTTCCACATCCTTACTAACACTTCTTGATAGGCTGATGAAGACTGTGTGATTCCTATATCCCTAGAGCTTAGCAATATGCCAAGTACATAGGTAGGCAGTCTACTACATGTTTTTCGAGTGAATGATTGGCACATAACTGCTAAGTAGAAGAATTGAGATTAACCGCATACCCTACTGATTGCAAAGCGCTTGTGGTCTCTTGCATTCTTTTACCTTATAGCTTTATTATACAATTTATCCTTTCAAAAACGTTTATTAAGTCAGACAAATAATTATGTAATATTCTGATAAGTACCATCATAGAAATCTGCACACACAGTATAAACACAGAAAAAGAAGTGACCAAACCCTCTTTGAGAGTAGAGAAGGGGTCTACAAACAGTTTGCAGAAATGCTACTTCAACTGAGTCTTGAATTCATTAAGCACAGAGGAAAGGTAGGGCGTGTCACAGGAGGGAAATAACTTATTCAGGGGACCTTAAAACTTGGCTCATGGTTGGCTATGTATTTATATTTAGTGAATAGATAAAGAAAGCAAAGAGGGAGGGAGGAAAATACTAAACTTTAAAACAAGTTCACTAAGCATTTGGAAACCCGAGGCTTAAAGTAAGGAGAAGAGCAGAGCTAATGATACAGACTTGAGGCTTACTCCAGATGATAGCAGTAGAAATTATAGATATGCATAAGATTGTCTAAGGAGAGTATAGAGCATAAAGGAGAAAGAAACCAAAACCCTAAGAAGCACAATCATTTTAAGAAAAGATAGAAAAATTAAAAGGAAGTGAAAGAAATACAGGAAAACTTGCTAGGGAGGTAGGGAGAGAAGCAGGGGGGAGTAGAGTCAGGGAATATAAGAAAGGAGAGCCCTTTTATCATTTAATTTTGTTATAATTTCAAGCTTACAAAAGCATTGTAAGAATAATACAAGTTTCCCAAATATCTTTCCTCCAGATTACTCTACTGTGTTAACATTTTACTATATTTGCTTAGCAAGTTTTTAAAGGAAGGAGATAAGAGATTCATATCACCTGATGTAGAAAAATAAATTATCTATTGGATGTGATAGTTAGAATTTAGGTAGAGTTTACAAGAACAGTTCCAATTAGAGCAGGTGGGAAATGAGGCAGGCTTCAATAAATTATGAGGTTGATGAAAAGTAAGGAAGTGGAAACAGCAAGTAGAAGCCCCTTTTACTAGTAGATTGATTGATTTTAAAATGAAAGGCAAAAAGGGAATGAGAGCCTGAGAATAGTGGTTCCCCATCATTACTATTTAAAAGTGAAACCTCTTCTGCTACTCATCTTTTCTAAAATAGTTTCTTCTCAGACTTAGGTCTAAGTGGCATTTTTATGTTTTATATCTTTCATTGTTTCAAATCTTGATCATAAGGCACATTTCCTTGGCCAAATAAGTTACTTTGAAATTATATCCGTATTTTGTTGCCTTAATTTTTTTTCTCATTTGTTTCCAT
Seq C2 exon
AATATGCCTAAACAGGAGTAGTAGTGGTAGCAGCCGTCAAGAAAGTCCTTCAGTTCCATCTTCTAAGGAAAATGAGAAGAAACATCATGGTGAAAAGATGGAGAGTTCTATTGATGAACAGGTTCAGACCGCTGCTGATGATTCTTTTCGAAGTGATAGTGTACCATCTCTTCCTGATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development